Please add hugene10stv1.cdf
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@gormley-matthew-3337
Last seen 7.7 years ago
Hello, I am trying to utilize affylmGUI (using limma in R) to analyze Affymetrix exon array data. Currently there is no way to manually specify a Chip Definition File (CDF) (it is downloaded automatically from http://www.bioconductor.org/data/metaData.html). The cdf I require, hugene10stv1, is not available. Can you please add this cdf to your metadata. Thank you so much. Sincerely, Matthew Gormley
cdf limma affylmGUI cdf limma affylmGUI • 506 views
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@james-w-macdonald-5106
Last seen 3 hours ago
United States
Hi Matthew, You might want to look here for options for analyzing exon array data: http://www.bioconductor.org/docs/workflows/oligoarrays/ Note that affylmGUI isn't an option as the affy package doesn't support these chips. Best, Jim Gormley, Matthew wrote: > Hello, > > I am trying to utilize affylmGUI (using limma in R) to analyze Affymetrix exon array data. Currently there is no way to manually specify a Chip Definition File (CDF) (it is downloaded automatically from http://www.bioconductor.org/data/metaData.html). The cdf I require, > hugene10stv1, is not available. Can you please add this cdf to your metadata. Thank you so much. > > Sincerely, > Matthew Gormley > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826
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