Hi when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above the intensity graph or how one in general can control the layout of the final graph. Thanks! Max -------------------------------------- Max Kauer CHILDREN'S CANCER RESEARCH INSTITUTE St. Anna Kinderkrebsforschung e.V. Zimmermannplatz 10, 1090 Wien, Austria

I had problem with that also, I ended up using the makeTestOverlay (it's in the pdf and looks like this: to <- makeTextOverlay("here is some text",xpos = 96133000, ypos = 0.5) genomeAxis <- makeGenomeAxis(add53 = TRUE,add35=TRUE) gdPlot(list(plusStrand,genomeAxis),overlay=c(to),add=TRUE) Cheers -----Original Message----- From: Kauer Max <maximilian.kauer@ccri.at> To: bioconductor at stat.math.ethz.ch Subject: [BioC] GenomeGraphs Date: Tue, 28 Apr 2009 14:32:13 +0200 Hi when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above the intensity graph or how one in general can control the layout of the final graph. Thanks! Max -------------------------------------- Max Kauer CHILDREN'S CANCER RESEARCH INSTITUTE St. Anna Kinderkrebsforschung e.V. Zimmermannplatz 10, 1090 Wien, Austria _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor