Question: GenomeGraphs
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gravatar for Max Kauer
10.6 years ago by
Max Kauer140
Max Kauer140 wrote:
Hi when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above the intensity graph or how one in general can control the layout of the final graph. Thanks! Max -------------------------------------- Max Kauer CHILDREN'S CANCER RESEARCH INSTITUTE St. Anna Kinderkrebsforschung e.V. Zimmermannplatz 10, 1090 Wien, Austria
cancer graph • 484 views
ADD COMMENTlink modified 10.6 years ago by Paul Leo970 • written 10.6 years ago by Max Kauer140
Answer: GenomeGraphs
0
gravatar for Paul Leo
10.6 years ago by
Paul Leo970
Paul Leo970 wrote:
I had problem with that also, I ended up using the makeTestOverlay (it's in the pdf and looks like this: to <- makeTextOverlay("here is some text",xpos = 96133000, ypos = 0.5) genomeAxis <- makeGenomeAxis(add53 = TRUE,add35=TRUE) gdPlot(list(plusStrand,genomeAxis),overlay=c(to),add=TRUE) Cheers -----Original Message----- From: Kauer Max <maximilian.kauer@ccri.at> To: bioconductor at stat.math.ethz.ch Subject: [BioC] GenomeGraphs Date: Tue, 28 Apr 2009 14:32:13 +0200 Hi when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above the intensity graph or how one in general can control the layout of the final graph. Thanks! Max -------------------------------------- Max Kauer CHILDREN'S CANCER RESEARCH INSTITUTE St. Anna Kinderkrebsforschung e.V. Zimmermannplatz 10, 1090 Wien, Austria _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 10.6 years ago by Paul Leo970
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