I'm learning to use crlmm(); I tested out with one sample .CEL file from affy SNP500K genechip, genotyping. I'm using Bioconductor on MAC OS 10.5; R version 2.9.0; bioconductor version 2.4. I keep getting the following error, and not able to figure out how to fix it; I appreciate any help. Thank you for your help. > crlmm (fulFileNames,outputDir,verbose=TRUE) Preparing environment for normalization. Normalization. Error in if (nb == .nb && pc == .pc) return() : missing value where TRUE/FALSE needed My Coyne mcoyne at boninc.com

What's your sessionInfo()? b On 23/06/2009, at 00:38, "mcoyne at boninc.com" <mcoyne at="" boninc.com=""> wrote: > I'm learning to use crlmm(); I tested out with one sample .CEL file > from affy SNP500K genechip, genotyping. I'm using Bioconductor on > MAC OS 10.5; R version 2.9.0; bioconductor version > 2.4. I keep getting the following error, and not able to figure > out how to fix it; I appreciate any help. Thank you for your help. > >> crlmm (fulFileNames,outputDir,verbose=TRUE) > Preparing environment for normalization. > Normalization. > Error in if (nb == .nb && pc == .pc) return() : > missing value where TRUE/FALSE needed > > My Coyne > mcoyne at boninc.com > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor