Question: R: Found seven 3'UTR sequences attributed to the same ensembl_gene_id
0
gravatar for mauede@alice.it
10.2 years ago by
mauede@alice.it850 wrote:
Unluckily there is no one in our group who has clear idea about these Biology matter. We are missing the Biology professor who is still hospitalized. I asked someone in my group "is there a unique 3UTR region in a gene?" I was answered "yes". I know there is plenty of material about these topics on the web. I really need some very basic reading just to get a grasp of rudimental concepts. Best regards, Maura -----Messaggio originale----- Da: Sean Davis [mailto:seandavi@gmail.com] Inviato: mar 30/06/2009 17.31 A: mauede@alice.it Cc: Miichael Watson; Steve Lianoglou; Bioconductor List Oggetto: Re: Found seven 3'UTR sequences attributed to the same ensembl_gene_id On Tue, Jun 30, 2009 at 11:28 AM, <mauede@alice.it> wrote: > I found seven 3'UTR sequences attributed to the same ensembl_gene_id. > Naively, I wonder whether it is possible, or it is > the consequence of a logic bug in my code. Can the same gene have more than > one 3'UTR region ? > In the following is is what I have extracted running just the first > iteration of a nested loop. > Is that *real* ? > Hi, Maura. Genes do not have 3'UTR regions. Only transcripts have 3'UTRs. So, since a gene can have multiple transcripts, there will be multiple 3'UTRs associated with each gene. So, I think your code is probably fine. Sean > > Thank you for your attention. > Maura > > > hmart <- useMart('ensembl', dataset='hsapiens_gene_ensembl') > > > enst > [1] "ENST00000376439" > > > rec <- > getBM(attributes=c('hgnc_symbol','ensembl_gene_id','ensembl_transcri pt_id','refseq_dna'), > + filters='ensembl_transcript_id', values=enst, mart=hmart) > > rec > hgnc_symbol ensembl_gene_id ensembl_transcript_id refseq_dna > 1 RABL2A ENSG00000144134 ENST00000376439 NA > > > rec[,"ensembl_gene_id"] > [1] "ENSG00000144134" > > > seq = > getSequence(id=rec[,"ensembl_gene_id"],type="ensembl_gene_id",seqTyp e="3utr",mart=hmart) > > > seq > > > 3utr > 1 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGTCTCGCTCTGTC GCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTC CTGCCTCAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGG TTTCACCATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGT GCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCA GATAGCTATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATC ACAGGAACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGC CATACCACAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGA GGCTGTCCTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACATAAA > 2 > > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGG > 3 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTACC CCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTTC AATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGGC TGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCTC AGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC ATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA TTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGCT ATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGAA CAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACCA CAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTC CTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAG CAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC AT > 4 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTACC CCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTTC AATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGGC TGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCTC AGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC ATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA TTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGCT ATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGAA CAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACCA CAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTC CTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAG CAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC ATAAA > 5 > CTGCTTCCTGCATCTGCTGCATCTCCGTGGGCTCCCCTCAGACCCTCTTCTGAAGGCCTGGGGTGTCT CTCCTGCCACCATGCCTGTGTCTGCAGGTGCCTGCCACCAGCCCCAGTCTGCTGCACGGGCCCTGGCAAG TAGAAAGCACTTGCCTTCTGACCACACGGGGAGCTGAGGGTCAGAGACGGAACCAGGGCTCGACCCTCCA CCTTGAAACCTTGAGATGGGGATGCTCCTCATTCTAGCCAGTTCCTCCTCAGCTCTCAAAACAAGGAACA GATGCTCAGGAAACCAGATCTGGACAAAAGTCATCTGAGCCTGGTGTGAGGCAGATTCCAGAAGTTTAGT TACAGACATCCTTTATAAGGAGACTTCATCGGGAATTCAAGACAACCTGGTGATTCATTGAAATTTGCCT GTGAAAGAGAATCTACATAGACTTCCTGCCACCTCTTGAGATGTGACAGTTGCTGACCCTCCCGCCACCA CACAGGGCGAGCCCCTAGCCCTGAGCTTGAACCATGTTGCTTGCACAAATAGCTGGGTGATTTAGAAGTG AGGTCAGCTGTGCCAGCAGTTACAGGGTGGTGGTTGTCTGTAACTTTAATCCACTGACTGTTGTACTAGG GCAGTTTGGGCTAGACACTTTGGAGGAGCTCCTGTGAAGGGCATGAAGGCTCACTGTAGCAGCAGCTCAG TTGTCTTTCAGAGTTCTGCCCTTAGAGCTGGTTTGCAGTGCTCATCCTTCTTGCTGATATTTTAAAATAG GTAGAAACAGGCTGGGCGCGGTGACTCATGCCTTTAATCCCAGTACTTTGGGAGGCCTAGGTGGGCAGAT CACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGTTGAAACCCCGTCTCTACTAGAAATACAAA AATTAGCCAGGCGTGGTGGCGCGCACCTGTAATCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGTTTG AAGACAGGAGAATCGTTTGAACCCAGGAGGTGGAGGTTGCAGTGGCAGTGAGCCAAGATACCGCCACTGC ACTCTAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAATAAATAAATAAATAAAAATAAAATAGGTAAA AACAAATTATAAAGTAATACAATTATGAACTGCAAATAATAAAACATAAAAATTACTTTAAAAAAATTTA AAGAGGCCGGGCACAGTGGCTTATGCCTGTAATCCCAGAAATTTGGGAGGCCGAGGCAGGAGGATCACTT GAGCCCGGGAGTCCAAGACCAGCCTCGTTAATATAATGAGAGCTTATCATCTCTACAAAAAATAAACAAA ATTAGCCAGGCATGGTGGCATGTGCCTGTAGTTCCAGCTACTCAGGAGGCTGAGGTAGGAGGATCACTGG AGCCCAGGGGGTGGAGGAGCAGTAAGCCAAGATTCTGCCACTGCACTCCAGCCTGGCTGACAGAGTAAGA CCCTATCTCAAAAAACAAAAAGCAGAAAGAACAAAGAAGTAAACAAAAGCTTAAAAGTAAATCAGCCAGG TGCAGTAGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCTAGGCAGGCAGATTACTGCAGGTCAAGAG TTTGAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAACTACAAAAATTAGCCAGGCATGG TGGTGCGCACCTGTAATCCCAGCTACTCCGGAGGCTGAGACAAGAGAATCGCTTGAACCTAGGAAGTGGA GGTTGCAGTGGCAGTGAGCCAAGATAGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATAT ATGGAGATCCCTTGAGATCAAGAGTTCGAGACCAGCCTGGCCAACACGGCAAAACCCTGTCTCTACTAAA AATAAAAAAA > 6 > > GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAG AGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTC GGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTG AATGACATAA > 7 > > GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAG AGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTC GGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTG AATGACAT > ensembl_gene_id > 1 ENSG00000144134 > 2 ENSG00000144134 > 3 ENSG00000144134 > 4 ENSG00000144134 > 5 ENSG00000144134 > 6 ENSG00000144134 > 7 ENSG00000144134 > > > > > > > Alice Messenger ;-) chatti anche con gli amici di Windows Live Messenger e > tutti i telefonini TIM! er > tutti i telefonini TIM! 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ADD COMMENTlink modified 10.2 years ago by David K Pritchard70 • written 10.2 years ago by mauede@alice.it850
Answer: R: Found seven 3'UTR sequences attributed to the same ensembl_gene_id
0
gravatar for David K Pritchard
10.2 years ago by
David K Pritchard70 wrote:
Maura, many genes can make multiple transcripts with different structures that we call alternative spliceforms. It is quite possible to have a gene which has multiple transcripts with 7 different 3'UTRs. A good place to check this out is the ensembl website that will show you the structure of the different transcripts encoded by the gene. I can not speak to the accuracy of your code but I took the ID I saw in your post ENSG00000144134 and went to www.ensembl.org and searched there for your ID. I looked at the gene which came up in detail. Try (http://www.ensembl.org/Homo_sapiens/Location/View?g=ENSG00000144134) and I saw that this gene did encode multiple transcripts with different 3'UTRs. I am not sure if I found seven different forms but there were a bunch. You could as a check take the 7 different 3'UTRs that you found and BLAST them at the ensembl web site and see if they all map to your gene of interest. David Pritchard On Wed, 1 Jul 2009 mauede at alice.it wrote: > Unluckily there is no one in our group who has clear idea about these Biology matter. > We are missing the Biology professor who is still hospitalized. > I asked someone in my group "is there a unique 3UTR region in a gene?" I was answered "yes". > > I know there is plenty of material about these topics on the web. > I really need some very basic reading just to get a grasp of rudimental concepts. > > Best regards, > Maura > > -----Messaggio originale----- > Da: Sean Davis [mailto:seandavi at gmail.com] > Inviato: mar 30/06/2009 17.31 > A: mauede at alice.it > Cc: Miichael Watson; Steve Lianoglou; Bioconductor List > Oggetto: Re: Found seven 3'UTR sequences attributed to the same ensembl_gene_id > > On Tue, Jun 30, 2009 at 11:28 AM, <mauede at="" alice.it=""> wrote: > >> I found seven 3'UTR sequences attributed to the same ensembl_gene_id. >> Naively, I wonder whether it is possible, or it is >> the consequence of a logic bug in my code. Can the same gene have more than >> one 3'UTR region ? >> In the following is is what I have extracted running just the first >> iteration of a nested loop. >> Is that *real* ? >> > Hi, Maura. > > Genes do not have 3'UTR regions. Only transcripts have 3'UTRs. So, since a > gene can have multiple transcripts, there will be multiple 3'UTRs associated > with each gene. So, I think your code is probably fine. > > Sean > > >> >> Thank you for your attention. >> Maura >> >> >> hmart <- useMart('ensembl', dataset='hsapiens_gene_ensembl') >> >>> enst >> [1] "ENST00000376439" >> >>> rec <- >> getBM(attributes=c('hgnc_symbol','ensembl_gene_id','ensembl_transcr ipt_id','refseq_dna'), >> + filters='ensembl_transcript_id', values=enst, mart=hmart) >>> rec >> hgnc_symbol ensembl_gene_id ensembl_transcript_id refseq_dna >> 1 RABL2A ENSG00000144134 ENST00000376439 NA >> >>> rec[,"ensembl_gene_id"] >> [1] "ENSG00000144134" >> >>> seq = >> getSequence(id=rec[,"ensembl_gene_id"],type="ensembl_gene_id",seqTy pe="3utr",mart=hmart) >> >>> seq >> >> >> 3utr >> 1 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGTCTCGCTCTGT CGCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCT CCTGCCTCAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGG GTTTCACCATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAG TGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGC AGATAGCTATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGAT CACAGGAACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAG CCATACCACAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAG AGGCTGTCCTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGG AGAGCTAGC! A! > GATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC ATAAA >> 2 >> >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGG >> 3 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTAC CCCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTT CAATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGG CTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCT CAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCAC CATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG ATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGC TATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGA ACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACC ACAAGGTAC! G! > TCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTCCTTTTTT TTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAGCAGATAT GCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCATTGTTTGC ATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGACAT >> 4 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTAC CCCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTT CAATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGG CTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCT CAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCAC CATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG ATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGC TATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGA ACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACC ACAAGGTAC! G! > TCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTCCTTTTTT TTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAGCAGATAT GCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCATTGTTTGC ATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGACATAAA >> 5 >> CTGCTTCCTGCATCTGCTGCATCTCCGTGGGCTCCCCTCAGACCCTCTTCTGAAGGCCTGGGGTGTC TCTCCTGCCACCATGCCTGTGTCTGCAGGTGCCTGCCACCAGCCCCAGTCTGCTGCACGGGCCCTGGCAA GTAGAAAGCACTTGCCTTCTGACCACACGGGGAGCTGAGGGTCAGAGACGGAACCAGGGCTCGACCCTCC ACCTTGAAACCTTGAGATGGGGATGCTCCTCATTCTAGCCAGTTCCTCCTCAGCTCTCAAAACAAGGAAC AGATGCTCAGGAAACCAGATCTGGACAAAAGTCATCTGAGCCTGGTGTGAGGCAGATTCCAGAAGTTTAG TTACAGACATCCTTTATAAGGAGACTTCATCGGGAATTCAAGACAACCTGGTGATTCATTGAAATTTGCC TGTGAAAGAGAATCTACATAGACTTCCTGCCACCTCTTGAGATGTGACAGTTGCTGACCCTCCCGCCACC ACACAGGGCGAGCCCCTAGCCCTGAGCTTGAACCATGTTGCTTGCACAAATAGCTGGGTGATTTAGAAGT GAGGTCAGCTGTGCCAGCAGTTACAGGGTGGTGGTTGTCTGTAACTTTAATCCACTGACTGTTGTACTAG GGCAGTTTGGGCTAGACACTTTGGAGGAGCTCCTGTGAAGGGCATGAAGGCTCACTGTAGCAGCAGCTCA GTTGTCTTTCAGAGTTCTGCCCTTAGAGCTGGTTTGCAGTGCTCATCCTTCTTGCTGATATTTTAAAATA GGTAGAAACAGGCTGGGCGCGGTGACTCATGCCTTTAATCCCAGTACTTTGGGAGGCCTAGGTGGGCAGA TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGTTGAAACCCCGTCTCTACTAGAAATACAA AAATTAGCCAGGCGTGGTGGCGCGCACCTGTAATCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGTTT GAAGACAGG! A! > GAATCGTTTGAACCCAGGAGGTGGAGGTTGCAGTGGCAGTGAGCCAAGATACCGCCACTGCACTCTAG CCTGGGCAACAGAGCAAGACTCCATCTCAAAATAAATAAATAAATAAAAATAAAATAGGTAAAAACAAAT TATAAAGTAATACAATTATGAACTGCAAATAATAAAACATAAAAATTACTTTAAAAAAATTTAAAGAGGC CGGGCACAGTGGCTTATGCCTGTAATCCCAGAAATTTGGGAGGCCGAGGCAGGAGGATCACTTGAGCCCG GGAGTCCAAGACCAGCCTCGTTAATATAATGAGAGCTTATCATCTCTACAAAAAATAAACAAAATTAGCC AGGCATGGTGGCATGTGCCTGTAGTTCCAGCTACTCAGGAGGCTGAGGTAGGAGGATCACTGGAGCCCAG GGGGTGGAGGAGCAGTAAGCCAAGATTCTGCCACTGCACTCCAGCCTGGCTGACAGAGTAAGACCCTATC TCAAAAAACAAAAAGCAGAAAGAACAAAGAAGTAAACAAAAGCTTAAAAGTAAATCAGCCAGGTGCAGTA GCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCTAGGCAGGCAGATTACTGCAGGTCAAGAGTTTGAGA CCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAACTACAAAAATTAGCCAGGCATGGTGGTGCG CACCTGTAATCCCAGCTACTCCGGAGGCTGAGACAAGAGAATCGCTTGAACCTAGGAAGTGGAGGTTGCA GTGGCAGTGAGCCAAGATAGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATATATGGAGA TCCCTTGAGATCAAGAGTTCGAGACCAGCCTGGCCAACACGGCAAAACCCTGTCTCTACTAAAAATAAAA AAA >> 6 >> >> GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACATAA >> 7 >> >> GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACAT >> ensembl_gene_id >> 1 ENSG00000144134 >> 2 ENSG00000144134 >> 3 ENSG00000144134 >> 4 ENSG00000144134 >> 5 ENSG00000144134 >> 6 ENSG00000144134 >> 7 ENSG00000144134 >> >> >> >> >> >> >> Alice Messenger ;-) chatti anche con gli amici di Windows Live Messenger e >> tutti i telefonini TIM! > > er >> > > > > > > tutti i telefonini TIM! > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 10.2 years ago by David K Pritchard70
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