R: Found seven 3'UTR sequences attributed to the same ensembl_gene_id
1
0
Entering edit mode
@mauedealiceit-3511
Last seen 9.6 years ago
Unluckily there is no one in our group who has clear idea about these Biology matter. We are missing the Biology professor who is still hospitalized. I asked someone in my group "is there a unique 3UTR region in a gene?" I was answered "yes". I know there is plenty of material about these topics on the web. I really need some very basic reading just to get a grasp of rudimental concepts. Best regards, Maura -----Messaggio originale----- Da: Sean Davis [mailto:seandavi@gmail.com] Inviato: mar 30/06/2009 17.31 A: mauede@alice.it Cc: Miichael Watson; Steve Lianoglou; Bioconductor List Oggetto: Re: Found seven 3'UTR sequences attributed to the same ensembl_gene_id On Tue, Jun 30, 2009 at 11:28 AM, <mauede@alice.it> wrote: > I found seven 3'UTR sequences attributed to the same ensembl_gene_id. > Naively, I wonder whether it is possible, or it is > the consequence of a logic bug in my code. Can the same gene have more than > one 3'UTR region ? > In the following is is what I have extracted running just the first > iteration of a nested loop. > Is that *real* ? > Hi, Maura. Genes do not have 3'UTR regions. Only transcripts have 3'UTRs. So, since a gene can have multiple transcripts, there will be multiple 3'UTRs associated with each gene. So, I think your code is probably fine. Sean > > Thank you for your attention. > Maura > > > hmart <- useMart('ensembl', dataset='hsapiens_gene_ensembl') > > > enst > [1] "ENST00000376439" > > > rec <- > getBM(attributes=c('hgnc_symbol','ensembl_gene_id','ensembl_transcri pt_id','refseq_dna'), > + filters='ensembl_transcript_id', values=enst, mart=hmart) > > rec > hgnc_symbol ensembl_gene_id ensembl_transcript_id refseq_dna > 1 RABL2A ENSG00000144134 ENST00000376439 NA > > > rec[,"ensembl_gene_id"] > [1] "ENSG00000144134" > > > seq = > getSequence(id=rec[,"ensembl_gene_id"],type="ensembl_gene_id",seqTyp e="3utr",mart=hmart) > > > seq > > > 3utr > 1 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGTCTCGCTCTGTC GCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTC CTGCCTCAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGG TTTCACCATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGT GCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCA GATAGCTATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATC ACAGGAACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGC CATACCACAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGA GGCTGTCCTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACATAAA > 2 > > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGG > 3 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTACC CCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTTC AATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGGC TGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCTC AGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC ATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA TTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGCT ATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGAA CAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACCA CAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTC CTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAG CAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC AT > 4 > GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCTG AATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCACA TTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACCA GATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGACA GTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTTT TGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTACC CCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTTC AATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGGC TGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCTC AGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC ATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA TTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGCT ATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGAA CAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACCA CAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTC CTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAG CAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC ATAAA > 5 > CTGCTTCCTGCATCTGCTGCATCTCCGTGGGCTCCCCTCAGACCCTCTTCTGAAGGCCTGGGGTGTCT CTCCTGCCACCATGCCTGTGTCTGCAGGTGCCTGCCACCAGCCCCAGTCTGCTGCACGGGCCCTGGCAAG TAGAAAGCACTTGCCTTCTGACCACACGGGGAGCTGAGGGTCAGAGACGGAACCAGGGCTCGACCCTCCA CCTTGAAACCTTGAGATGGGGATGCTCCTCATTCTAGCCAGTTCCTCCTCAGCTCTCAAAACAAGGAACA GATGCTCAGGAAACCAGATCTGGACAAAAGTCATCTGAGCCTGGTGTGAGGCAGATTCCAGAAGTTTAGT TACAGACATCCTTTATAAGGAGACTTCATCGGGAATTCAAGACAACCTGGTGATTCATTGAAATTTGCCT GTGAAAGAGAATCTACATAGACTTCCTGCCACCTCTTGAGATGTGACAGTTGCTGACCCTCCCGCCACCA CACAGGGCGAGCCCCTAGCCCTGAGCTTGAACCATGTTGCTTGCACAAATAGCTGGGTGATTTAGAAGTG AGGTCAGCTGTGCCAGCAGTTACAGGGTGGTGGTTGTCTGTAACTTTAATCCACTGACTGTTGTACTAGG GCAGTTTGGGCTAGACACTTTGGAGGAGCTCCTGTGAAGGGCATGAAGGCTCACTGTAGCAGCAGCTCAG TTGTCTTTCAGAGTTCTGCCCTTAGAGCTGGTTTGCAGTGCTCATCCTTCTTGCTGATATTTTAAAATAG GTAGAAACAGGCTGGGCGCGGTGACTCATGCCTTTAATCCCAGTACTTTGGGAGGCCTAGGTGGGCAGAT CACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGTTGAAACCCCGTCTCTACTAGAAATACAAA AATTAGCCAGGCGTGGTGGCGCGCACCTGTAATCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGTTTG AAGACAGGAGAATCGTTTGAACCCAGGAGGTGGAGGTTGCAGTGGCAGTGAGCCAAGATACCGCCACTGC ACTCTAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAATAAATAAATAAATAAAAATAAAATAGGTAAA AACAAATTATAAAGTAATACAATTATGAACTGCAAATAATAAAACATAAAAATTACTTTAAAAAAATTTA AAGAGGCCGGGCACAGTGGCTTATGCCTGTAATCCCAGAAATTTGGGAGGCCGAGGCAGGAGGATCACTT GAGCCCGGGAGTCCAAGACCAGCCTCGTTAATATAATGAGAGCTTATCATCTCTACAAAAAATAAACAAA ATTAGCCAGGCATGGTGGCATGTGCCTGTAGTTCCAGCTACTCAGGAGGCTGAGGTAGGAGGATCACTGG AGCCCAGGGGGTGGAGGAGCAGTAAGCCAAGATTCTGCCACTGCACTCCAGCCTGGCTGACAGAGTAAGA CCCTATCTCAAAAAACAAAAAGCAGAAAGAACAAAGAAGTAAACAAAAGCTTAAAAGTAAATCAGCCAGG TGCAGTAGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCTAGGCAGGCAGATTACTGCAGGTCAAGAG TTTGAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAACTACAAAAATTAGCCAGGCATGG TGGTGCGCACCTGTAATCCCAGCTACTCCGGAGGCTGAGACAAGAGAATCGCTTGAACCTAGGAAGTGGA GGTTGCAGTGGCAGTGAGCCAAGATAGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATAT ATGGAGATCCCTTGAGATCAAGAGTTCGAGACCAGCCTGGCCAACACGGCAAAACCCTGTCTCTACTAAA AATAAAAAAA > 6 > > GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAG AGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTC GGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTG AATGACATAA > 7 > > GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAG AGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTC GGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTG AATGACAT > ensembl_gene_id > 1 ENSG00000144134 > 2 ENSG00000144134 > 3 ENSG00000144134 > 4 ENSG00000144134 > 5 ENSG00000144134 > 6 ENSG00000144134 > 7 ENSG00000144134 > > > > > > > Alice Messenger ;-) chatti anche con gli amici di Windows Live Messenger e > tutti i telefonini TIM! er > tutti i telefonini TIM! [[alternative HTML version deleted]]
• 859 views
ADD COMMENT
0
Entering edit mode
@david-k-pritchard-590
Last seen 9.6 years ago
Maura, many genes can make multiple transcripts with different structures that we call alternative spliceforms. It is quite possible to have a gene which has multiple transcripts with 7 different 3'UTRs. A good place to check this out is the ensembl website that will show you the structure of the different transcripts encoded by the gene. I can not speak to the accuracy of your code but I took the ID I saw in your post ENSG00000144134 and went to www.ensembl.org and searched there for your ID. I looked at the gene which came up in detail. Try (http://www.ensembl.org/Homo_sapiens/Location/View?g=ENSG00000144134) and I saw that this gene did encode multiple transcripts with different 3'UTRs. I am not sure if I found seven different forms but there were a bunch. You could as a check take the 7 different 3'UTRs that you found and BLAST them at the ensembl web site and see if they all map to your gene of interest. David Pritchard On Wed, 1 Jul 2009 mauede at alice.it wrote: > Unluckily there is no one in our group who has clear idea about these Biology matter. > We are missing the Biology professor who is still hospitalized. > I asked someone in my group "is there a unique 3UTR region in a gene?" I was answered "yes". > > I know there is plenty of material about these topics on the web. > I really need some very basic reading just to get a grasp of rudimental concepts. > > Best regards, > Maura > > -----Messaggio originale----- > Da: Sean Davis [mailto:seandavi at gmail.com] > Inviato: mar 30/06/2009 17.31 > A: mauede at alice.it > Cc: Miichael Watson; Steve Lianoglou; Bioconductor List > Oggetto: Re: Found seven 3'UTR sequences attributed to the same ensembl_gene_id > > On Tue, Jun 30, 2009 at 11:28 AM, <mauede at="" alice.it=""> wrote: > >> I found seven 3'UTR sequences attributed to the same ensembl_gene_id. >> Naively, I wonder whether it is possible, or it is >> the consequence of a logic bug in my code. Can the same gene have more than >> one 3'UTR region ? >> In the following is is what I have extracted running just the first >> iteration of a nested loop. >> Is that *real* ? >> > Hi, Maura. > > Genes do not have 3'UTR regions. Only transcripts have 3'UTRs. So, since a > gene can have multiple transcripts, there will be multiple 3'UTRs associated > with each gene. So, I think your code is probably fine. > > Sean > > >> >> Thank you for your attention. >> Maura >> >> >> hmart <- useMart('ensembl', dataset='hsapiens_gene_ensembl') >> >>> enst >> [1] "ENST00000376439" >> >>> rec <- >> getBM(attributes=c('hgnc_symbol','ensembl_gene_id','ensembl_transcr ipt_id','refseq_dna'), >> + filters='ensembl_transcript_id', values=enst, mart=hmart) >>> rec >> hgnc_symbol ensembl_gene_id ensembl_transcript_id refseq_dna >> 1 RABL2A ENSG00000144134 ENST00000376439 NA >> >>> rec[,"ensembl_gene_id"] >> [1] "ENSG00000144134" >> >>> seq = >> getSequence(id=rec[,"ensembl_gene_id"],type="ensembl_gene_id",seqTy pe="3utr",mart=hmart) >> >>> seq >> >> >> 3utr >> 1 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGTCTCGCTCTGT CGCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCT CCTGCCTCAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGG GTTTCACCATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAG TGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGC AGATAGCTATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGAT CACAGGAACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAG CCATACCACAAGGTACGTCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAG AGGCTGTCCTTTTTTTTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGG AGAGCTAGC! A! > GATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCAT TGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGAC ATAAA >> 2 >> >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGG >> 3 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTAC CCCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTT CAATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGG CTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCT CAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCAC CATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG ATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGC TATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGA ACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACC ACAAGGTAC! G! > TCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTCCTTTTTT TTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAGCAGATAT GCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCATTGTTTGC ATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGACAT >> 4 >> GGGGCTGGGGCTAGGGGTGGGTGGAGCCCTTTTAAAATACCCTTCCCTTCAACAACTCTCCAGCTCT GAATGGAGAAACTCTCTAGGCCATCCCCTCTTCTACCTCCTGCAACCCACCCATCCTATTAGCCTCCCAC ATTCAAGGCCCGTGATACAGGGATGAGGTCAGCACCAGCAAACTCTGGACTGGTGGAAGAATTCCCCACC AGATCTCCTTGAAGCAGAATTAGGGATCAGCATCATTAACACCTTCCCCACCCCCTCCCCCCAGGCAGAC AGTGAAGAGAATCAGAAAACATGATTATGTGTCACTTTAATACAGGAAATTTAGGTGTTTTTTGGTGTTT TTGTTTTTGTTTTCTTTCCAAAGCTCACCTCGGGGACAATTCCTTGGGCTTCTCCTGAGGTAATGATTAC CCCCCCACCCACAGCTGAGTCTGTGAGGCCCCATCCTTTCCCTACGTTTTCTCCCATCTTTTTTCCTCTT CAATCTCCCAGTCATCTGGTTTGTTTGTTTCTTTGTTCGTCCTGAGACGGAGTCTCGCTCTGTCGCCAGG CTGGAGTGCAGTGGCGCAGTCTCGGCTCGCTGCAACCTCTGACTCCCTGGTTCAAACGATTCTCCTGCCT CAGCCTCCCGAGTGGCTGGCATCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCAC CATGTTGCCCAGGATGGTCTCGATCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG ATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTTAAACAATCGTTTTTGAGCAGATAGC TATTCATTCCAGATTTCCGTGTACCCACTCTGTTTCAGGAGCTCTTCTAGGTAAAGCTGAGATCACAGGA ACAGCAGGTGACAGGCCTAGCTATAGTTAGGAATACACAAGCGGTAAAATCGAGTCCTTACAGCCATACC ACAAGGTAC! G! > TCCATTTGGACTACAAGAAGAGCTTCCTTTAAAGTTCCTATTTCAGCATAAAGAGGCTGTCCTTTTTT TTTAGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGAGAGCTAGCAGATAT GCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCTCGGGCATTGTTTGC ATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCTGAATGACATAAA >> 5 >> CTGCTTCCTGCATCTGCTGCATCTCCGTGGGCTCCCCTCAGACCCTCTTCTGAAGGCCTGGGGTGTC TCTCCTGCCACCATGCCTGTGTCTGCAGGTGCCTGCCACCAGCCCCAGTCTGCTGCACGGGCCCTGGCAA GTAGAAAGCACTTGCCTTCTGACCACACGGGGAGCTGAGGGTCAGAGACGGAACCAGGGCTCGACCCTCC ACCTTGAAACCTTGAGATGGGGATGCTCCTCATTCTAGCCAGTTCCTCCTCAGCTCTCAAAACAAGGAAC AGATGCTCAGGAAACCAGATCTGGACAAAAGTCATCTGAGCCTGGTGTGAGGCAGATTCCAGAAGTTTAG TTACAGACATCCTTTATAAGGAGACTTCATCGGGAATTCAAGACAACCTGGTGATTCATTGAAATTTGCC TGTGAAAGAGAATCTACATAGACTTCCTGCCACCTCTTGAGATGTGACAGTTGCTGACCCTCCCGCCACC ACACAGGGCGAGCCCCTAGCCCTGAGCTTGAACCATGTTGCTTGCACAAATAGCTGGGTGATTTAGAAGT GAGGTCAGCTGTGCCAGCAGTTACAGGGTGGTGGTTGTCTGTAACTTTAATCCACTGACTGTTGTACTAG GGCAGTTTGGGCTAGACACTTTGGAGGAGCTCCTGTGAAGGGCATGAAGGCTCACTGTAGCAGCAGCTCA GTTGTCTTTCAGAGTTCTGCCCTTAGAGCTGGTTTGCAGTGCTCATCCTTCTTGCTGATATTTTAAAATA GGTAGAAACAGGCTGGGCGCGGTGACTCATGCCTTTAATCCCAGTACTTTGGGAGGCCTAGGTGGGCAGA TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGTTGAAACCCCGTCTCTACTAGAAATACAA AAATTAGCCAGGCGTGGTGGCGCGCACCTGTAATCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGTTT GAAGACAGG! A! > GAATCGTTTGAACCCAGGAGGTGGAGGTTGCAGTGGCAGTGAGCCAAGATACCGCCACTGCACTCTAG CCTGGGCAACAGAGCAAGACTCCATCTCAAAATAAATAAATAAATAAAAATAAAATAGGTAAAAACAAAT TATAAAGTAATACAATTATGAACTGCAAATAATAAAACATAAAAATTACTTTAAAAAAATTTAAAGAGGC CGGGCACAGTGGCTTATGCCTGTAATCCCAGAAATTTGGGAGGCCGAGGCAGGAGGATCACTTGAGCCCG GGAGTCCAAGACCAGCCTCGTTAATATAATGAGAGCTTATCATCTCTACAAAAAATAAACAAAATTAGCC AGGCATGGTGGCATGTGCCTGTAGTTCCAGCTACTCAGGAGGCTGAGGTAGGAGGATCACTGGAGCCCAG GGGGTGGAGGAGCAGTAAGCCAAGATTCTGCCACTGCACTCCAGCCTGGCTGACAGAGTAAGACCCTATC TCAAAAAACAAAAAGCAGAAAGAACAAAGAAGTAAACAAAAGCTTAAAAGTAAATCAGCCAGGTGCAGTA GCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCTAGGCAGGCAGATTACTGCAGGTCAAGAGTTTGAGA CCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAACTACAAAAATTAGCCAGGCATGGTGGTGCG CACCTGTAATCCCAGCTACTCCGGAGGCTGAGACAAGAGAATCGCTTGAACCTAGGAAGTGGAGGTTGCA GTGGCAGTGAGCCAAGATAGCGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATATATGGAGA TCCCTTGAGATCAAGAGTTCGAGACCAGCCTGGCCAACACGGCAAAACCCTGTCTCTACTAAAAATAAAA AAA >> 6 >> >> GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACATAA >> 7 >> >> GGGGCTGGGGCTAGGGGAATAGTTTGGACCTTGTGCCTCCTGTGGGAGGCTGAGGACTGCAAGAGGA GAGCTAGCAGATATGCCTGTTCACCCCTCTCTGGTACTTGTGGCTTGCTAGTATGTTTTTATGATAATCT CGGGCATTGTTTGCATTGTGTTTATTAATAGGGTTTTGTTTTTATTGTTTCCTTTTTTACAGTAAAGGCT GAATGACAT >> ensembl_gene_id >> 1 ENSG00000144134 >> 2 ENSG00000144134 >> 3 ENSG00000144134 >> 4 ENSG00000144134 >> 5 ENSG00000144134 >> 6 ENSG00000144134 >> 7 ENSG00000144134 >> >> >> >> >> >> >> Alice Messenger ;-) chatti anche con gli amici di Windows Live Messenger e >> tutti i telefonini TIM! > > er >> > > > > > > tutti i telefonini TIM! > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENT

Login before adding your answer.

Traffic: 865 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6