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Question: Question about inspecting splices indexes (oneChannelGUI)
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gravatar for Guido Leoni
9.0 years ago by
Guido Leoni20
Guido Leoni20 wrote:
Dear bioconductors I'm trying to use the OneChannelGUI package to analyze some exon arrays experiment... After succesfully normalized, filtered, computed MIDAS and SI index of my array, now I'm trying to use the function inspecting splicing indexes(on the midas alternatively spliced probes detected) to obtain gene level and exon level probeset ids for my alternatively spliced exons (then Iwould use them to identify the Isoform for the alternative splicing event) as in the manual is mentioned. Everytime I try to use the inspecting splicing indexes function I retrieve always the same error: Error in xy coords(x,y,xlabel,ylabel,log) x and Y lenghts differ. Someone could give my any suggestion? Is there something wrong in what I do? Many thank -- Guido Leoni [[alternative HTML version deleted]]
ADD COMMENTlink modified 9.0 years ago • written 9.0 years ago by Guido Leoni20
0
gravatar for Guido Leoni
9.0 years ago by
Guido Leoni20
Guido Leoni20 wrote:
Dear bioconductors I'm trying to use the OneChannelGUI package to analyze some exon arrays experiment... After succesfully normalized, filtered, computed MIDAS and SI index of my array, now I'm trying to use the function inspecting splicing indexes(on the midas alternatively spliced probes detected) to obtain gene level and exon level probeset ids for my alternatively spliced exons (then I'd use them to identify the Isoform for the alternative splicing event) as in the manual is mentioned. Everytime I try to use the inspecting splicing indexes function I retrieve always the same error: Error in xy coords(x,y,xlabel,ylabel,log) x and Y lenghts differ. Someone could give my any suggestion? Is there something wrong in what I do? Many thanks -- Guido Leoni National Research Institute on Food and Nutrition (I.N.R.A.N.) via Ardeatina 546 00178 Rome Italy tel + 39 06 51 49 41 (operator) + 39 06 51 49 4519 (direct) [[alternative HTML version deleted]]
ADD COMMENTlink written 9.0 years ago by Guido Leoni20
Dear bioconductors I'm trying to use the OneChannelGUI package to analyze some exon arrays experiment... After succesfully normalized, filtered, computed MIDAS and SI index of my array, now I'm trying to use the function inspecting splicing indexes(on the midas alternatively spliced probes detected) to obtain gene level and exon level probeset ids for my alternatively spliced exons (then I'd use them to identify the Isoform for the alternative splicing event) as in the manual is mentioned. Everytime I try to use the inspecting splicing indexes function I retrieve always the same error: Error in xy coords(x,y,xlabel,ylabel,log) x and Y lenghts differ. Someone could give my any suggestion? Is there something wrong in what I do? Many thanks -- Guido Leoni National Research Institute on Food and Nutrition (I.N.R.A.N.) via Ardeatina 546 00178 Rome Italy tel + 39 06 51 49 41 (operator) + 39 06 51 49 4519 (direct) -- Guido Leoni National Research Institute on Food and Nutrition (I.N.R.A.N.) via Ardeatina 546 00178 Rome Italy tel + 39 06 51 49 41 (operator) + 39 06 51 49 4519 (direct) [[alternative HTML version deleted]]
ADD REPLYlink written 9.0 years ago by Guido Leoni200
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