Hi everyone. When I load the library VSN I have a error. Any tip is very appreciated. > library(vsn) Error in bindingIsLocked(m2, where) : not an environment Error in firstlib(which.lib.loc, package) : Cannot load without package "Biobase" Error in library(vsn) : .First.lib failed > library(Biobase) Error in bindingIsLocked(m2, where) : not an environment Error in library(Biobase) : .First.lib failed > I use R 1.8.0 Marcelo Luiz de Laia, M.Sc. Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular Universidade Estadual Paulista - UNESP Via de Acesso Prof. Paulo Donato Castelane, Km 05 14.884-900 - Jaboticabal, SP, Brazil PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com ---

You need to upgrade to the devel versions of BioC if you are using R-1.8.0 HTH, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM >>> Hi everyone. When I load the library VSN I have a error. Any tip is very appreciated. > library(vsn) Error in bindingIsLocked(m2, where) : not an environment Error in firstlib(which.lib.loc, package) : Cannot load without package "Biobase" Error in library(vsn) : .First.lib failed > library(Biobase) Error in bindingIsLocked(m2, where) : not an environment Error in library(Biobase) : .First.lib failed > I use R 1.8.0 Marcelo Luiz de Laia, M.Sc. Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular Universidade Estadual Paulista - UNESP Via de Acesso Prof. Paulo Donato Castelane, Km 05 14.884-900 - Jaboticabal, SP, Brazil PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com --- _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor

Hi Marcelo, which version of bioconductor are you using? With R 1.8.0, you need the most recent development version of Biobase etc. Or, with release 1.2, you have to use R 1.7.1. Btw, bioC release 1.3 is imminent - what is presently the development version will +/- last-minite updates become the release 1.3 Best wishes Wolfgang ------------------------------------- Wolfgang Huber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany Phone: +49 6221 424709 Fax: +49 6221 42524709 Http: www.dkfz.de/abt0840/whuber ------------------------------------- On Wed, 29 Oct 2003, Marcelo Luiz de Laia wrote: > Hi everyone. > > When I load the library VSN I have a error. > > Any tip is very appreciated. > > > library(vsn) > Error in bindingIsLocked(m2, where) : not an environment > Error in firstlib(which.lib.loc, package) : > Cannot load without package "Biobase" > Error in library(vsn) : .First.lib failed > > library(Biobase) > Error in bindingIsLocked(m2, where) : not an environment > Error in library(Biobase) : .First.lib failed > >

Dear MacDonald, Dear Huber and Dear All, I upgrade R from version 1.7.1 to 1.8.0 in a few days a go. I was learnning limma (to analyses my microarray data) and to day I decide learnning about VSN (to analyses my macroarray data). Can you send me a instructions for automatic upgrade to devel mode in windows? Thanks a lot Marcelo > -----Original Message----- > From: James MacDonald [mailto:jmacdon@med.umich.edu] > Sent: quarta-feira, 29 de outubro de 2003 14:30 > To: mlaia@fcav.unesp.br; bioconductor@stat.math.ethz.ch > Subject: Re: [BioC] Error in load VSN library > > > You need to upgrade to the devel versions of BioC if you are using R-1.8.0 > > HTH, > > Jim > > > > James W. MacDonald > Affymetrix and cDNA Microarray Core > University of Michigan Cancer Center > 1500 E. Medical Center Drive > 7410 CCGC > Ann Arbor MI 48109 > 734-647-5623 > > >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM >>> > Hi everyone. > > When I load the library VSN I have a error. > > Any tip is very appreciated. > > > library(vsn) > Error in bindingIsLocked(m2, where) : not an environment > Error in firstlib(which.lib.loc, package) : > Cannot load without package "Biobase" > Error in library(vsn) : .First.lib failed > > library(Biobase) > Error in bindingIsLocked(m2, where) : not an environment > Error in library(Biobase) : .First.lib failed > > > > I use R 1.8.0 > > Marcelo Luiz de Laia, M.Sc. > Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular > Universidade Estadual Paulista - UNESP > Via de Acesso Prof. Paulo Donato Castelane, Km 05 > 14.884-900 - Jaboticabal, SP, Brazil > PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) > Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com > --- > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > --- > Incoming mail is certified Virus Free. > Checked by AVG anti-virus system (http://www.grisoft.com). > Version: 6.0.532 / Virus Database: 326 - Release Date: 27/10/2003 > ---

source("http://www.bioconductor.org/getBioC.R") getBioC(relLevel="devel") Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:54AM >>> Dear MacDonald, Dear Huber and Dear All, I upgrade R from version 1.7.1 to 1.8.0 in a few days a go. I was learnning limma (to analyses my microarray data) and to day I decide learnning about VSN (to analyses my macroarray data). Can you send me a instructions for automatic upgrade to devel mode in windows? Thanks a lot Marcelo > -----Original Message----- > From: James MacDonald [mailto:jmacdon@med.umich.edu] > Sent: quarta-feira, 29 de outubro de 2003 14:30 > To: mlaia@fcav.unesp.br; bioconductor@stat.math.ethz.ch > Subject: Re: [BioC] Error in load VSN library > > > You need to upgrade to the devel versions of BioC if you are using R-1.8.0 > > HTH, > > Jim > > > > James W. MacDonald > Affymetrix and cDNA Microarray Core > University of Michigan Cancer Center > 1500 E. Medical Center Drive > 7410 CCGC > Ann Arbor MI 48109 > 734-647-5623 > > >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM >>> > Hi everyone. > > When I load the library VSN I have a error. > > Any tip is very appreciated. > > > library(vsn) > Error in bindingIsLocked(m2, where) : not an environment > Error in firstlib(which.lib.loc, package) : > Cannot load without package "Biobase" > Error in library(vsn) : .First.lib failed > > library(Biobase) > Error in bindingIsLocked(m2, where) : not an environment > Error in library(Biobase) : .First.lib failed > > > > I use R 1.8.0 > > Marcelo Luiz de Laia, M.Sc. > Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular > Universidade Estadual Paulista - UNESP > Via de Acesso Prof. Paulo Donato Castelane, Km 05 > 14.884-900 - Jaboticabal, SP, Brazil > PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.) > Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com > --- > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > --- > Incoming mail is certified Virus Free. > Checked by AVG anti-virus system (http://www.grisoft.com). > Version: 6.0.532 / Virus Database: 326 - Release Date: 27/10/2003 > ---