rtracklayer browserView
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@giulio-di-giovanni-950
Last seen 8.0 years ago
Hi, I'm using rtracklayer to plot my data into a UCSC genome browser view. Thanks to the developers, the package is really useful! I was wondering if there is a way to plot the data values into the view not using bars, but using for example lines, or other graphical methods. My data are from a CGH analysis, and it will be much more understandable... Can anyone help me? It is a matter of tweaking the function code? Or maybe genome browser doesn't allow it? Thanks in advance for any hints... G _________________________________________________________________ [[alternative HTML version deleted]]
CGH rtracklayer CGH rtracklayer • 659 views
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Entering edit mode
@giulio-di-giovanni-950
Last seen 8.0 years ago
Ok, found it, thanks anyway. while laying the track using (layTrack) it is possible to set graphType="points" to display points instead than bars and also autoScale=F and viewLimits=c(minY,maxY) to set the data range Y limits. Thanks D > From: perimessaggini@hotmail.com > To: bioconductor@stat.math.ethz.ch > Date: Fri, 4 Sep 2009 13:04:41 +0000 > Subject: [BioC] rtracklayer browserView > > > Hi, > > I'm using rtracklayer to plot my data into a UCSC genome browser view. Thanks to the developers, the package is really useful! > I was wondering if there is a way to plot the data values into the view not using bars, but using for example lines, or other graphical methods. My data are from a CGH analysis, and it will be much more understandable... > Can anyone help me? It is a matter of tweaking the function code? Or maybe genome browser doesn't allow it? > > Thanks in advance for any hints... > > G > > > > > _________________________________________________________________ > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor _________________________________________________________________ [[alternative HTML version deleted]]
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