Question: automatically loading of annotation package
0
gravatar for Markus Schmidberger
10.0 years ago by
Markus Schmidberger380 wrote:
Hi, is there any way for an autimatic loading of the corresponding annotation packages. I have to analyze 15 different datasets with different AffyBatches from different chip types. I want to do something like that: library(affy) library(ALL) data("ALL") l <- paste(annotation(ALL), "db", sep=".") library(l) Fehler in library(l) : es gibt kein Paket 'l' Any ideas? Thanks Markus -- Dipl.-Tech. Math. Markus Schmidberger Ludwig-Maximilians-Universit?t M?nchen IBE - Institut f?r medizinische Informationsverarbeitung, Biometrie und Epidemiologie Lehrstuhl f?r Biometrie und Bioinformatik Marchioninistr. 15, D-81377 Muenchen URL: http://www.ibe.med.uni-muenchen.de Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de Tel: +49 (089) 7095 - 4497
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ADD COMMENTlink modified 10.0 years ago by Chao-Jen Wong580 • written 10.0 years ago by Markus Schmidberger380
Answer: automatically loading of annotation package
0
gravatar for Martin Morgan
10.0 years ago by
Martin Morgan ♦♦ 23k
United States
Martin Morgan ♦♦ 23k wrote:
Hi Markus -- Markus Schmidberger wrote: > Hi, > > is there any way for an autimatic loading of the corresponding > annotation packages. I have to analyze 15 different datasets with > different AffyBatches from different chip types. I want to do something > like that: > > library(affy) > library(ALL) > data("ALL") > l <- paste(annotation(ALL), "db", sep=".") > library(l) I think you want require(l, character.only=TRUE). You might peak at / use annotate::getAnnMap for an existing solution. Martin > Fehler in library(l) : es gibt kein Paket 'l' > > Any ideas? > > Thanks > Markus >
ADD COMMENTlink written 10.0 years ago by Martin Morgan ♦♦ 23k
Answer: automatically loading of annotation package
0
gravatar for James F. Reid
10.0 years ago by
James F. Reid610
James F. Reid610 wrote:
Hi Markus, you will need to use library(l, character.only = TRUE). HTH. J. Markus Schmidberger wrote: > Hi, > > is there any way for an autimatic loading of the corresponding > annotation packages. I have to analyze 15 different datasets with > different AffyBatches from different chip types. I want to do something > like that: > > library(affy) > library(ALL) > data("ALL") > l <- paste(annotation(ALL), "db", sep=".") > library(l) > Fehler in library(l) : es gibt kein Paket 'l' > > Any ideas? > > Thanks > Markus >
ADD COMMENTlink written 10.0 years ago by James F. Reid610
Answer: automatically loading of annotation package
0
gravatar for Chao-Jen Wong
10.0 years ago by
Chao-Jen Wong580
USA/Seattle/Fred Hutchinson Cancer Research Center
Chao-Jen Wong580 wrote:
Hi, Markus, Try this: library(l, character.only=TRUE) Chao-Jen Markus Schmidberger wrote: > Hi, > > is there any way for an autimatic loading of the corresponding > annotation packages. I have to analyze 15 different datasets with > different AffyBatches from different chip types. I want to do > something like that: > > library(affy) > library(ALL) > data("ALL") > l <- paste(annotation(ALL), "db", sep=".") > library(l) > Fehler in library(l) : es gibt kein Paket 'l' > > Any ideas? > > Thanks > Markus > -- Chao-Jen Wong Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., M2-B876 PO Box 19024 Seattle, WA 98109 206.667.4485 cwon2 at fhcrc.org
ADD COMMENTlink written 10.0 years ago by Chao-Jen Wong580
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