Question: limmaGUI - venn-diagram & top-table anomaly?
9.4 years ago by
D.Levin@warwick.ac.uk • 10 wrote:
Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a 0.001 p-value cut-off gives a different number than the top- table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is going on? Thanks Danny
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