Question: only 9-digit refseq IDs when using custom CDF for mouse4302 array
0
gravatar for Jarek Bryk
10.1 years ago by
Jarek Bryk110
Jarek Bryk110 wrote:
Hello, I am not sure if this is a problem, but here we go. When I analyse my Affy mouse4302 data using custom CDF file from the Dai lab that collapses probe/sets onto RefSeq IDs: > affy.batch.object at cdfName<-"Mouse4302_Mm_REFSEQ" I only get 9-digit RefSeq IDs, and none of the more common 6-digit IDs. Maybe I am missing something, but it seems a bit strange to get this bias and I wonder why could it be so? There is no apparent difference between the 6- and 9-digit IDs on the GenBank side, as far as I can tell. I would be very grateful for any clues, cheers jarek -- Jarek Bryk Max Planck Institute for Evolutionary Biology August Thienemann Str. 2 | 24306 Pl?n, Germany tel. +49 4522 763 287 | bryk at evolbio.mpg.de
go mouse4302 cdf affy • 430 views
ADD COMMENTlink written 10.1 years ago by Jarek Bryk110
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 127 users visited in the last hour