Question: [Fwd: Problem installing RMAGEML]
0
gravatar for Md.Mamunur Rashid
10.0 years ago by
Md.Mamunur Rashid260 wrote:
hi all, please ignore my last post. I have found it out. Rookie mistake. just updated the R configuration with $ R CMD javareconf Thnaks anyway. regards, Mamun -------- Original Message -------- Subject: Problem installing RMAGEML Date: Tue, 29 Sep 2009 16:38:46 +0100 From: Md.Mamunur Rashid <mamunur.rashid@kcl.ac.uk> To: bioconductor <bioconductor@stat.math.ethz.ch> Dear Bioc members, I ran in to a problem while trying to install RMAGEML package. /usr/bin/ld: cannot find -ljava . (please look at the bottom for details of the error) I have set the following in ~/.bashrc file. export JAVA_HOME=/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64 export LD_LIBRARY_PATH=/home/mamun/R-2.9.0/lib64/R/library/rJava/jri:/ home/mamun/R-2.9.0/lib64/R/lib:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0 .x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/j re/lib/amd64/native_threads My system details: linux version - Fedora 11, java version - java-1.6.0-openjdk-1.6.0.0.x86_64 R-version - 2.9.0 Any suggestion is welcome. thanks in advance. regards, Mamun Details of the problem : rmageml.c: In function updateMAGEML: rmageml.c:599: warning: cast from pointer to integer of different size gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o -L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/amd64 -L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/i386 -ljava -L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/amd64/ser ver -L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/jre/lib/i386/clie nt -ljvm -L/home/mamun/R-2.9.0/lib64/R/lib -lR /usr/bin/ld: cannot find -ljava collect2: ld returned 1 exit status make: *** [RMAGEML.so] Error 1 ERROR: compilation failed for package RMAGEML * Removing /home/mamun/R-2.9.0/lib64/R/library/RMAGEML [[alternative HTML version deleted]]
rmageml • 434 views
ADD COMMENTlink written 10.0 years ago by Md.Mamunur Rashid260
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 306 users visited in the last hour