Question: Supressing welcome to bioconductor message?
0
gravatar for Jeff Gentry
10.1 years ago by
Jeff Gentry3.9k
Jeff Gentry3.9k wrote:
I could have sworn that I've seen this before, but my google-fu is failing me at the moment. How can I suppress the "Welcome to Bioconductor" message when BioC loads? I'm trying to develop a module for GenePattern which uses (indirectly) Biobase - but GP spits out a stderr.txt file which really seems to be both stderr & stdout ... it's confusing to folks who don't understand that it's not actually an error. Thanks -J
biobase • 579 views
ADD COMMENTlink modified 10.1 years ago by Sean Davis21k • written 10.1 years ago by Jeff Gentry3.9k
Answer: Supressing welcome to bioconductor message?
0
gravatar for Seth Falcon
10.1 years ago by
Seth Falcon150
Seth Falcon150 wrote:
Hi Jeff, On 10/22/09 10:45 AM, Jeff Gentry wrote: > I could have sworn that I've seen this before, but my google-fu is failing > me at the moment. How can I suppress the "Welcome to > Bioconductor" message when BioC loads? Is this what you are looking for? > suppressMessages(library("Biobase")) > + seth
ADD COMMENTlink written 10.1 years ago by Seth Falcon150
> Is this what you are looking for? > > suppressMessages(library("Biobase")) Seth, Sean ... That's it, thanks. I knew I'd seen that before, but couldn't track it down. Thanks -J
ADD REPLYlink written 10.1 years ago by Jeff Gentry3.9k
Answer: Supressing welcome to bioconductor message?
0
gravatar for Sean Davis
10.1 years ago by
Sean Davis21k
United States
Sean Davis21k wrote:
On Thu, Oct 22, 2009 at 1:45 PM, Jeff Gentry <jgentry@jimmy.harvard.edu>wrote: > I could have sworn that I've seen this before, but my google-fu is failing > me at the moment. How can I suppress the "Welcome to > Bioconductor" message when BioC loads? > > I'm trying to develop a module for GenePattern which uses > (indirectly) Biobase - but GP spits out a stderr.txt file which really > seems to be both stderr & stdout ... it's confusing to folks who don't > understand that it's not actually an error. > > Hi, Jeff. Surround the offending library() call with suppressMessages(): suppressMessages(library(Biobase)) Does that do it? Sean [[alternative HTML version deleted]]
ADD COMMENTlink written 10.1 years ago by Sean Davis21k
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