Hi,
I can't seem to build the annotationDBI package (v1.8.0) from the
source
under R2.9.2.
I get the following error, both in windows an linux:
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Error in rematchDefinition(definition, fdef, mnames, fnames,
signature)
:
arguments after '...' in the generic (all.names) must appear in the
method, in the same place at the end of the argument list
Error : unable to load R code in package 'AnnotationDbi'
ERROR: lazy loading failed for package 'AnnotationDbi'
* Removing
'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi'
ERROR
Installation failed.
Does anybody know a fix?
Rgrds,
marc
**********************************************************************
**
**********************************************************************
**
*****************************
Marc Warmoes
PhD student, OncoProteomics Laboratory
OncoProteomics Laboratory
VUmc-Cancer Center Amsterdam, Room CCA 1.50
Dept. Medical Oncology
VU University Medical Center
De Boelelaan 1117 1081HV
Amsterdam, The Netherlands
Phone: 31-(0)204443845
OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/>
[[alternative HTML version deleted]]
First read the posting guide and provide a sessionInfo() for the R
version in use. Second note that Bioc 2.4 is the package series to
use for R 2.9.x.
Third note that AnnotationDbi 1.6.1 is the version to use for R 2.9.x.
You can see this by visiting
http://www.bioconductor.org/packages/2.4/bioc/html/AnnotationDbi.html
On Thu, Nov 5, 2009 at 5:10 AM, Warmoes, M.O. <m.warmoes at="" vumc.nl="">
wrote:
> Hi,
>
> I can't seem to build the annotationDBI package (v1.8.0) from the
source
> under R2.9.2.
>
> I get the following error, both in windows an linux:
>
>
>
> Creating a new generic function for "toString" in "AnnotationDbi"
>
> Creating a new generic function for "rev" in "AnnotationDbi"
>
> Creating a new generic function for "colnames" in "AnnotationDbi"
>
> Creating a new generic function for "subset" in "AnnotationDbi"
>
> Creating a new generic function for "head" in "AnnotationDbi"
>
> Creating a new generic function for "tail" in "AnnotationDbi"
>
> Creating a new generic function for "nrow" in "AnnotationDbi"
>
> Creating a new generic function for "ncol" in "AnnotationDbi"
>
> Creating a new generic function for "as.list" in "AnnotationDbi"
>
> Creating a new generic function for "ls" in "AnnotationDbi"
>
> Creating a new generic function for "mget" in "AnnotationDbi"
>
> Creating a new generic function for "eapply" in "AnnotationDbi"
>
> Error in rematchDefinition(definition, fdef, mnames, fnames,
signature)
> :
>
> ?arguments after '...' in the generic (all.names) must appear in the
> method, in the same place at the end of the argument list
>
> Error : unable to load R code in package 'AnnotationDbi'
>
> ERROR: lazy loading failed for package 'AnnotationDbi'
>
> * Removing
> 'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi'
>
> ?ERROR
>
> Installation failed.
>
>
>
> Does anybody know a fix?
>
> Rgrds,
> marc
>
>
>
> ********************************************************************
****
> ********************************************************************
****
> *****************************
>
> Marc Warmoes
>
> PhD student, ?OncoProteomics Laboratory
>
> OncoProteomics Laboratory
>
> VUmc-Cancer Center Amsterdam, Room CCA 1.50
>
> Dept. Medical Oncology
>
> VU University Medical Center
>
> De Boelelaan 1117 1081HV
>
> Amsterdam, The Netherlands
>
> Phone: 31-(0)204443845
>
> OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/>
>
>
>
>
> ? ? ? ?[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
http://news.gmane.org/gmane.science.biology.informatics.conductor
>
Hi,
Found a solution,
Installed R.2.10, works fine now,
Thx
**********************************************************************
**
**********************************************************************
**
*****************************
Marc Warmoes
PhD student, OncoProteomics Laboratory
OncoProteomics Laboratory
VUmc-Cancer Center Amsterdam, Room CCA 1.50
Dept. Medical Oncology
VU University Medical Center
De Boelelaan 1117 1081HV
Amsterdam, The Netherlands
Phone: 31-(0)204443845
OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/>
________________________________
Van: Warmoes, M.O.
Verzonden: donderdag 5 november 2009 11:10
Aan: 'bioconductor@stat.math.ethz.ch'
Onderwerp: annotationDbi error
Hi,
I can't seem to build the annotationDBI package (v1.8.0) from the
source
under R2.9.2.
I get the following error, both in windows an linux:
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Error in rematchDefinition(definition, fdef, mnames, fnames,
signature)
:
arguments after '...' in the generic (all.names) must appear in the
method, in the same place at the end of the argument list
Error : unable to load R code in package 'AnnotationDbi'
ERROR: lazy loading failed for package 'AnnotationDbi'
* Removing
'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi'
ERROR
Installation failed.
Does anybody know a fix?
Rgrds,
marc
**********************************************************************
**
**********************************************************************
**
*****************************
Marc Warmoes
PhD student, OncoProteomics Laboratory
OncoProteomics Laboratory
VUmc-Cancer Center Amsterdam, Room CCA 1.50
Dept. Medical Oncology
VU University Medical Center
De Boelelaan 1117 1081HV
Amsterdam, The Netherlands
Phone: 31-(0)204443845
OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/>
[[alternative HTML version deleted]]