Hi, I can't seem to build the annotationDBI package (v1.8.0) from the source under R2.9.2. I get the following error, both in windows an linux: Creating a new generic function for "toString" in "AnnotationDbi" Creating a new generic function for "rev" in "AnnotationDbi" Creating a new generic function for "colnames" in "AnnotationDbi" Creating a new generic function for "subset" in "AnnotationDbi" Creating a new generic function for "head" in "AnnotationDbi" Creating a new generic function for "tail" in "AnnotationDbi" Creating a new generic function for "nrow" in "AnnotationDbi" Creating a new generic function for "ncol" in "AnnotationDbi" Creating a new generic function for "as.list" in "AnnotationDbi" Creating a new generic function for "ls" in "AnnotationDbi" Creating a new generic function for "mget" in "AnnotationDbi" Creating a new generic function for "eapply" in "AnnotationDbi" Error in rematchDefinition(definition, fdef, mnames, fnames, signature) : arguments after '...' in the generic (all.names) must appear in the method, in the same place at the end of the argument list Error : unable to load R code in package 'AnnotationDbi' ERROR: lazy loading failed for package 'AnnotationDbi' * Removing 'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi' ERROR Installation failed. Does anybody know a fix? Rgrds, marc ********************************************************************** ** ********************************************************************** ** ***************************** Marc Warmoes PhD student, OncoProteomics Laboratory OncoProteomics Laboratory VUmc-Cancer Center Amsterdam, Room CCA 1.50 Dept. Medical Oncology VU University Medical Center De Boelelaan 1117 1081HV Amsterdam, The Netherlands Phone: 31-(0)204443845 OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/> [[alternative HTML version deleted]]

First read the posting guide and provide a sessionInfo() for the R version in use. Second note that Bioc 2.4 is the package series to use for R 2.9.x. Third note that AnnotationDbi 1.6.1 is the version to use for R 2.9.x. You can see this by visiting http://www.bioconductor.org/packages/2.4/bioc/html/AnnotationDbi.html On Thu, Nov 5, 2009 at 5:10 AM, Warmoes, M.O. <m.warmoes at="" vumc.nl=""> wrote: > Hi, > > I can't seem to build the annotationDBI package (v1.8.0) from the source > under R2.9.2. > > I get the following error, both in windows an linux: > > > > Creating a new generic function for "toString" in "AnnotationDbi" > > Creating a new generic function for "rev" in "AnnotationDbi" > > Creating a new generic function for "colnames" in "AnnotationDbi" > > Creating a new generic function for "subset" in "AnnotationDbi" > > Creating a new generic function for "head" in "AnnotationDbi" > > Creating a new generic function for "tail" in "AnnotationDbi" > > Creating a new generic function for "nrow" in "AnnotationDbi" > > Creating a new generic function for "ncol" in "AnnotationDbi" > > Creating a new generic function for "as.list" in "AnnotationDbi" > > Creating a new generic function for "ls" in "AnnotationDbi" > > Creating a new generic function for "mget" in "AnnotationDbi" > > Creating a new generic function for "eapply" in "AnnotationDbi" > > Error in rematchDefinition(definition, fdef, mnames, fnames, signature) > : > > ?arguments after '...' in the generic (all.names) must appear in the > method, in the same place at the end of the argument list > > Error : unable to load R code in package 'AnnotationDbi' > > ERROR: lazy loading failed for package 'AnnotationDbi' > > * Removing > 'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi' > > ?ERROR > > Installation failed. > > > > Does anybody know a fix? > > Rgrds, > marc > > > > ******************************************************************** **** > ******************************************************************** **** > ***************************** > > Marc Warmoes > > PhD student, ?OncoProteomics Laboratory > > OncoProteomics Laboratory > > VUmc-Cancer Center Amsterdam, Room CCA 1.50 > > Dept. Medical Oncology > > VU University Medical Center > > De Boelelaan 1117 1081HV > > Amsterdam, The Netherlands > > Phone: 31-(0)204443845 > > OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/> > > > > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >

Hi, Found a solution, Installed R.2.10, works fine now, Thx ********************************************************************** ** ********************************************************************** ** ***************************** Marc Warmoes PhD student, OncoProteomics Laboratory OncoProteomics Laboratory VUmc-Cancer Center Amsterdam, Room CCA 1.50 Dept. Medical Oncology VU University Medical Center De Boelelaan 1117 1081HV Amsterdam, The Netherlands Phone: 31-(0)204443845 OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/> ________________________________ Van: Warmoes, M.O. Verzonden: donderdag 5 november 2009 11:10 Aan: 'bioconductor@stat.math.ethz.ch' Onderwerp: annotationDbi error Hi, I can't seem to build the annotationDBI package (v1.8.0) from the source under R2.9.2. I get the following error, both in windows an linux: Creating a new generic function for "toString" in "AnnotationDbi" Creating a new generic function for "rev" in "AnnotationDbi" Creating a new generic function for "colnames" in "AnnotationDbi" Creating a new generic function for "subset" in "AnnotationDbi" Creating a new generic function for "head" in "AnnotationDbi" Creating a new generic function for "tail" in "AnnotationDbi" Creating a new generic function for "nrow" in "AnnotationDbi" Creating a new generic function for "ncol" in "AnnotationDbi" Creating a new generic function for "as.list" in "AnnotationDbi" Creating a new generic function for "ls" in "AnnotationDbi" Creating a new generic function for "mget" in "AnnotationDbi" Creating a new generic function for "eapply" in "AnnotationDbi" Error in rematchDefinition(definition, fdef, mnames, fnames, signature) : arguments after '...' in the generic (all.names) must appear in the method, in the same place at the end of the argument list Error : unable to load R code in package 'AnnotationDbi' ERROR: lazy loading failed for package 'AnnotationDbi' * Removing 'C:/DOCUME~1/MC0D1~1.WAR/LOCALS~1/Temp/Rinst208074993/AnnotationDbi' ERROR Installation failed. Does anybody know a fix? Rgrds, marc ********************************************************************** ** ********************************************************************** ** ***************************** Marc Warmoes PhD student, OncoProteomics Laboratory OncoProteomics Laboratory VUmc-Cancer Center Amsterdam, Room CCA 1.50 Dept. Medical Oncology VU University Medical Center De Boelelaan 1117 1081HV Amsterdam, The Netherlands Phone: 31-(0)204443845 OPL website: www.oncoproteomics.nl <http: www.oncoproteomics.nl=""/> [[alternative HTML version deleted]]