Vince, Thanks for setting me straight on this. - Paul On Nov 9, 2009, at 7:34 PM, Vincent Carey wrote: > There's no superseding. CMA developers provide their own image of the > golub data. You do not need to use golubEsets. look at > CMA/data/golub.rda -- their doc indicates it is adapted from the image > given in multtest package. In that package there is a little more > metadata on the genes present in the selection. > > On Mon, Nov 9, 2009 at 10:18 PM, Paul Shannon > <pshannon at="" systemsbiology.org=""> wrote: >> Example 1 in the CMA vignette begins >> >>> data(golub) >>> golubY <- golub[, 1] >>> golubX <- as.matrix(golub[, -1]) >> >> It appears that the golub data package has been superseded by >> golubEsets (v >> 1.4.7). It is not immediately clear to me how to extract the >> equivalent of >> golubY and golubX from the ExpressionSet. >> >> Any advice? >> >> Thanks! >> >> - Paul >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >>