problem on install package RBGL
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LIYUN ▴ 60
@liyun-3773
Last seen 7.4 years ago
hi,   I met a problem when install RBGL package. here is the error information: * Installing *source* package ‘RBGL’ ... untarring boost include tree... ** libs g++ -I/usr/share/R/include     -IboostIncl -fpic  -g -O2 -c bbc.cpp -o bbc.o In file included from boostIncl/boost/mpl/apply.hpp:23, from boostIncl/boost/iterator/iterator_facade.hpp:34, from boostIncl/boost/generator_iterator.hpp:16, from RBGL.hpp:17, from bbc.cpp:1: boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: missing binary operator before token "(" boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary operator before token "(" In file included from boostIncl/boost/mpl/bind.hpp:27, from boostIncl/boost/mpl/lambda.hpp:18, from boostIncl/boost/mpl/apply.hpp:25, from boostIncl/boost/iterator/iterator_facade.hpp:34, from boostIncl/boost/generator_iterator.hpp:16, from RBGL.hpp:17, from bbc.cpp:1: boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: missing binary operator before token "(" boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary operator before token "(" In file included from boostIncl/boost/mpl/lambda.hpp:18, from boostIncl/boost/mpl/apply.hpp:25, from boostIncl/boost/iterator/iterator_facade.hpp:34, from boostIncl/boost/generator_iterator.hpp:16, from RBGL.hpp:17, from bbc.cpp:1: boostIncl/boost/mpl/bind.hpp:364:31: error: missing binary operator before token "(" boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator before token "(" In file included from boostIncl/boost/mpl/lambda.hpp:22, from boostIncl/boost/mpl/apply.hpp:25, from boostIncl/boost/iterator/iterator_facade.hpp:34, from boostIncl/boost/generator_iterator.hpp:16, from RBGL.hpp:17, from bbc.cpp:1: boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31: error: missing binary operator before token "(" In file included from boostIncl/boost/iterator/iterator_facade.hpp:34, from boostIncl/boost/generator_iterator.hpp:16, from RBGL.hpp:17, from bbc.cpp:1: boostIncl/boost/mpl/apply.hpp:138:31: error: missing binary operator before token "(" In file included from /usr/include/c++/4.4/backward/hash_set:59, from boostIncl/boost/graph/adjacency_list.hpp:22, from RBGL.hpp:26, from bbc.cpp:1: /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. make: *** [bbc.o] error 1 ERROR: compilation failed for package ‘RBGL’ * Removing ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’ The downloaded packages are in ‘/tmp/Rtmp6CoA1c/downloaded_packages’ Warning message: In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,  :   installation of package 'RBGL' had non-zero exit status and this is my r information: sessionInfo() R version 2.9.2 (2009-08-24) i486-pc-linux-gnu locale: LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_CN .UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC_N AME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDENTI FICATION=C attached base packages: [1] stats graphics  grDevices utils     datasets methods   base other attached packages:n [1] graph_1.22.5 loaded via a namespace (and not attached): [1] tcltk_2.9.2 tools_2.9.2 My g++ version is 4.4.1 ubuntu thanks. LiYun [[alternative HTML version deleted]]
RBGL RBGL • 1.2k views
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@lilongisb-sibch-1725
Last seen 7.4 years ago
you are using an old version of RBGL. The latest release has taken care of this issue. Li > > > hi, > ? I met a problem when install RBGL package. > here is > the error information: > * Installing > *source* package ‘RBGL’ ... > untarring boost include > tree... > ** libs > g++ > -I/usr/share/R/include???? -IboostIncl? > -fpic? -g -O2 -c bbc.cpp -o bbc.o > In file included from > boostIncl/boost/mpl/apply.hpp:23, > ???????????????? > from boostIncl/boost/iterator/iterator_facade.hpp:34, > ???????????????? > from boostIncl/boost/generator_iterator.hpp:16, > ???????????????? > from RBGL.hpp:17, > ???????????????? > from bbc.cpp:1: > boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: > missing binary operator before token "(" > boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary > operator before token "(" > In file included from > boostIncl/boost/mpl/bind.hpp:27, > ???????????????? > from boostIncl/boost/mpl/lambda.hpp:18, > ???????????????? > from boostIncl/boost/mpl/apply.hpp:25, > ???????????????? > from boostIncl/boost/iterator/iterator_facade.hpp:34, > ???????????????? > from boostIncl/boost/generator_iterator.hpp:16, > ???????????????? > from RBGL.hpp:17, > ???????????????? > from bbc.cpp:1: > boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: > missing binary operator before token "(" > boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary > operator before token "(" > In file included from > boostIncl/boost/mpl/lambda.hpp:18, > ???????????????? > from boostIncl/boost/mpl/apply.hpp:25, > ???????????????? > from boostIncl/boost/iterator/iterator_facade.hpp:34, > ???????????????? > from boostIncl/boost/generator_iterator.hpp:16, > ???????????????? > from RBGL.hpp:17, > ???????????????? > from bbc.cpp:1: > boostIncl/boost/mpl/bind.hpp:364:31: error: missing > binary operator before token "(" > boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator > before token "(" > In file included from > boostIncl/boost/mpl/lambda.hpp:22, > ???????????????? > from boostIncl/boost/mpl/apply.hpp:25, > ???????????????? > from boostIncl/boost/iterator/iterator_facade.hpp:34, > ???????????????? > from boostIncl/boost/generator_iterator.hpp:16, > ???????????????? > from RBGL.hpp:17, > ???????????????? > from bbc.cpp:1: > boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31: > error: missing binary operator before token "(" > In file > included from boostIncl/boost/iterator/iterator_facade.hpp:34, > ???????????????? > from boostIncl/boost/generator_iterator.hpp:16, > ???????????????? > from RBGL.hpp:17, > ???????????????? > from bbc.cpp:1: > boostIncl/boost/mpl/apply.hpp:138:31: error: missing > binary operator before token "(" > In file included from > /usr/include/c++/4.4/backward/hash_set:59, > ???????????????? > from boostIncl/boost/graph/adjacency_list.hpp:22, > ???????????????? > from RBGL.hpp:26, > ???????????????? > from bbc.cpp:1: > /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: #warning > This file includes at least one deprecated or antiquated header which may > be removed without further notice at a future date. Please use a > non-deprecated interface with equivalent functionality instead. For a > listing of replacement headers and interfaces, consult the file > backward_warning.h. To disable this warning use -Wno-deprecated. > make: *** [bbc.o] error 1 > ERROR: compilation failed for package > ‘RBGL’ > * Removing > ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’ > > The downloaded packages are in > ??? > ‘/tmp/Rtmp6CoA1c/downloaded_packages’ > Warning message: > In install.packages(pkgs = pkgs, repos = repos, dependencies = > dependencies,? : > ? installation of package 'RBGL' had > non-zero exit status > and this is my r information: > sessionInfo() > R version 2.9.2 (2009-08-24) > > i486-pc-linux-gnu > > locale: > LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_ CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC _NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDEN TIFICATION=C > > attached base packages: > [1] stats???? > graphics? grDevices utils???? datasets? > methods?? base???? > > other > attached packages:n > [1] graph_1.22.5 > > loaded via a > namespace (and not attached): > [1] tcltk_2.9.2 tools_2.9.2 > > My g++ version is 4.4.1 ubuntu > > > thanks. > > LiYun > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
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is RBGL 1.20.0 old? Li Long ??: > you are using an old version of RBGL. The latest release has taken care > of this issue. > > Li > > >> hi, >> I met a problem when install RBGL package. >> here is >> the error information: >> * Installing >> *source* package ‘RBGL’ ... >> untarring boost include >> tree... >> ** libs >> g++ >> -I/usr/share/R/include -IboostIncl >> -fpic -g -O2 -c bbc.cpp -o bbc.o >> In file included from >> boostIncl/boost/mpl/apply.hpp:23, >> >> from boostIncl/boost/iterator/iterator_facade.hpp:34, >> >> from boostIncl/boost/generator_iterator.hpp:16, >> >> from RBGL.hpp:17, >> >> from bbc.cpp:1: >> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >> missing binary operator before token "(" >> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >> operator before token "(" >> In file included from >> boostIncl/boost/mpl/bind.hpp:27, >> >> from boostIncl/boost/mpl/lambda.hpp:18, >> >> from boostIncl/boost/mpl/apply.hpp:25, >> >> from boostIncl/boost/iterator/iterator_facade.hpp:34, >> >> from boostIncl/boost/generator_iterator.hpp:16, >> >> from RBGL.hpp:17, >> >> from bbc.cpp:1: >> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >> missing binary operator before token "(" >> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >> operator before token "(" >> In file included from >> boostIncl/boost/mpl/lambda.hpp:18, >> >> from boostIncl/boost/mpl/apply.hpp:25, >> >> from boostIncl/boost/iterator/iterator_facade.hpp:34, >> >> from boostIncl/boost/generator_iterator.hpp:16, >> >> from RBGL.hpp:17, >> >> from bbc.cpp:1: >> boostIncl/boost/mpl/bind.hpp:364:31: error: missing >> binary operator before token "(" >> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator >> before token "(" >> In file included from >> boostIncl/boost/mpl/lambda.hpp:22, >> >> from boostIncl/boost/mpl/apply.hpp:25, >> >> from boostIncl/boost/iterator/iterator_facade.hpp:34, >> >> from boostIncl/boost/generator_iterator.hpp:16, >> >> from RBGL.hpp:17, >> >> from bbc.cpp:1: >> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31: >> error: missing binary operator before token "(" >> In file >> included from boostIncl/boost/iterator/iterator_facade.hpp:34, >> >> from boostIncl/boost/generator_iterator.hpp:16, >> >> from RBGL.hpp:17, >> >> from bbc.cpp:1: >> boostIncl/boost/mpl/apply.hpp:138:31: error: missing >> binary operator before token "(" >> In file included from >> /usr/include/c++/4.4/backward/hash_set:59, >> >> from boostIncl/boost/graph/adjacency_list.hpp:22, >> >> from RBGL.hpp:26, >> >> from bbc.cpp:1: >> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: #warning >> This file includes at least one deprecated or antiquated header which may >> be removed without further notice at a future date. Please use a >> non-deprecated interface with equivalent functionality instead. For a >> listing of replacement headers and interfaces, consult the file >> backward_warning.h. To disable this warning use -Wno-deprecated. >> make: *** [bbc.o] error 1 >> ERROR: compilation failed for package >> ‘RBGL’ >> * Removing >> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’ >> >> The downloaded packages are in >> >> ‘/tmp/Rtmp6CoA1c/downloaded_packages’ >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, : >> installation of package 'RBGL' had >> non-zero exit status >> and this is my r information: >> sessionInfo() >> R version 2.9.2 (2009-08-24) >> >> i486-pc-linux-gnu >> >> locale: >> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh _CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;L C_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDE NTIFICATION=C >> >> attached base packages: >> [1] stats >> graphics grDevices utils datasets >> methods base >> >> other >> attached packages:n >> [1] graph_1.22.5 >> >> loaded via a >> namespace (and not attached): >> [1] tcltk_2.9.2 tools_2.9.2 >> >> My g++ version is 4.4.1 ubuntu >> >> >> thanks. >> >> LiYun >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > > >
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yes. For R 2.10.0/BioConductor 2.5 release, RBGL is 1.22.0 Li > is RBGL 1.20.0 old? > > Li Long ??????: >> you are using an old version of RBGL. The latest release has taken care >> of this issue. >> >> Li >> >> >>> hi, >>> I met a problem when install RBGL package. >>> here is >>> the error information: >>> * Installing >>> *source* package ‘RBGL’ ... >>> untarring boost include >>> tree... >>> ** libs >>> g++ >>> -I/usr/share/R/include -IboostIncl >>> -fpic -g -O2 -c bbc.cpp -o bbc.o >>> In file included from >>> boostIncl/boost/mpl/apply.hpp:23, >>> >>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>> >>> from boostIncl/boost/generator_iterator.hpp:16, >>> >>> from RBGL.hpp:17, >>> >>> from bbc.cpp:1: >>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >>> missing binary operator before token "(" >>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >>> operator before token "(" >>> In file included from >>> boostIncl/boost/mpl/bind.hpp:27, >>> >>> from boostIncl/boost/mpl/lambda.hpp:18, >>> >>> from boostIncl/boost/mpl/apply.hpp:25, >>> >>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>> >>> from boostIncl/boost/generator_iterator.hpp:16, >>> >>> from RBGL.hpp:17, >>> >>> from bbc.cpp:1: >>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >>> missing binary operator before token "(" >>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >>> operator before token "(" >>> In file included from >>> boostIncl/boost/mpl/lambda.hpp:18, >>> >>> from boostIncl/boost/mpl/apply.hpp:25, >>> >>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>> >>> from boostIncl/boost/generator_iterator.hpp:16, >>> >>> from RBGL.hpp:17, >>> >>> from bbc.cpp:1: >>> boostIncl/boost/mpl/bind.hpp:364:31: error: missing >>> binary operator before token "(" >>> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator >>> before token "(" >>> In file included from >>> boostIncl/boost/mpl/lambda.hpp:22, >>> >>> from boostIncl/boost/mpl/apply.hpp:25, >>> >>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>> >>> from boostIncl/boost/generator_iterator.hpp:16, >>> >>> from RBGL.hpp:17, >>> >>> from bbc.cpp:1: >>> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31: >>> error: missing binary operator before token "(" >>> In file >>> included from boostIncl/boost/iterator/iterator_facade.hpp:34, >>> >>> from boostIncl/boost/generator_iterator.hpp:16, >>> >>> from RBGL.hpp:17, >>> >>> from bbc.cpp:1: >>> boostIncl/boost/mpl/apply.hpp:138:31: error: missing >>> binary operator before token "(" >>> In file included from >>> /usr/include/c++/4.4/backward/hash_set:59, >>> >>> from boostIncl/boost/graph/adjacency_list.hpp:22, >>> >>> from RBGL.hpp:26, >>> >>> from bbc.cpp:1: >>> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: >>> #warning >>> This file includes at least one deprecated or antiquated header which >>> may >>> be removed without further notice at a future date. Please use a >>> non-deprecated interface with equivalent functionality instead. For a >>> listing of replacement headers and interfaces, consult the file >>> backward_warning.h. To disable this warning use -Wno-deprecated. >>> make: *** [bbc.o] error 1 >>> ERROR: compilation failed for package >>> ‘RBGL’ >>> * Removing >>> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’ >>> >>> The downloaded packages are in >>> >>> ‘/tmp/Rtmp6CoA1c/downloaded_packages’ >>> Warning message: >>> In install.packages(pkgs = pkgs, repos = repos, dependencies = >>> dependencies, : >>> installation of package 'RBGL' had >>> non-zero exit status >>> and this is my r information: >>> sessionInfo() >>> R version 2.9.2 (2009-08-24) >>> >>> i486-pc-linux-gnu >>> >>> locale: >>> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=z h_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8; LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_ID ENTIFICATION=C >>> >>> attached base packages: >>> [1] stats >>> graphics grDevices utils datasets >>> methods base >>> >>> other >>> attached packages:n >>> [1] graph_1.22.5 >>> >>> loaded via a >>> namespace (and not attached): >>> [1] tcltk_2.9.2 tools_2.9.2 >>> >>> My g++ version is 4.4.1 ubuntu >>> >>> >>> thanks. >>> >>> LiYun >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> >> >> > > >
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Thank you very much for your help, the problem has been solved. i Long ??: > yes. For R 2.10.0/BioConductor 2.5 release, RBGL is 1.22.0 > > Li > > >> is RBGL 1.20.0 old? >> >> Li Long ??????: >> >>> you are using an old version of RBGL. The latest release has taken care >>> of this issue. >>> >>> Li >>> >>> >>> >>>> hi, >>>> I met a problem when install RBGL package. >>>> here is >>>> the error information: >>>> * Installing >>>> *source* package ‘RBGL’ ... >>>> untarring boost include >>>> tree... >>>> ** libs >>>> g++ >>>> -I/usr/share/R/include -IboostIncl >>>> -fpic -g -O2 -c bbc.cpp -o bbc.o >>>> In file included from >>>> boostIncl/boost/mpl/apply.hpp:23, >>>> >>>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>>> >>>> from boostIncl/boost/generator_iterator.hpp:16, >>>> >>>> from RBGL.hpp:17, >>>> >>>> from bbc.cpp:1: >>>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >>>> missing binary operator before token "(" >>>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >>>> operator before token "(" >>>> In file included from >>>> boostIncl/boost/mpl/bind.hpp:27, >>>> >>>> from boostIncl/boost/mpl/lambda.hpp:18, >>>> >>>> from boostIncl/boost/mpl/apply.hpp:25, >>>> >>>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>>> >>>> from boostIncl/boost/generator_iterator.hpp:16, >>>> >>>> from RBGL.hpp:17, >>>> >>>> from bbc.cpp:1: >>>> boostIncl/boost/mpl/apply_wrap.hpp:81:31: error: >>>> missing binary operator before token "(" >>>> boostIncl/boost/mpl/apply_wrap.hpp:173:31: error: missing binary >>>> operator before token "(" >>>> In file included from >>>> boostIncl/boost/mpl/lambda.hpp:18, >>>> >>>> from boostIncl/boost/mpl/apply.hpp:25, >>>> >>>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>>> >>>> from boostIncl/boost/generator_iterator.hpp:16, >>>> >>>> from RBGL.hpp:17, >>>> >>>> from bbc.cpp:1: >>>> boostIncl/boost/mpl/bind.hpp:364:31: error: missing >>>> binary operator before token "(" >>>> boostIncl/boost/mpl/bind.hpp:531:31: error: missing binary operator >>>> before token "(" >>>> In file included from >>>> boostIncl/boost/mpl/lambda.hpp:22, >>>> >>>> from boostIncl/boost/mpl/apply.hpp:25, >>>> >>>> from boostIncl/boost/iterator/iterator_facade.hpp:34, >>>> >>>> from boostIncl/boost/generator_iterator.hpp:16, >>>> >>>> from RBGL.hpp:17, >>>> >>>> from bbc.cpp:1: >>>> boostIncl/boost/mpl/aux_/full_lambda.hpp:230:31: >>>> error: missing binary operator before token "(" >>>> In file >>>> included from boostIncl/boost/iterator/iterator_facade.hpp:34, >>>> >>>> from boostIncl/boost/generator_iterator.hpp:16, >>>> >>>> from RBGL.hpp:17, >>>> >>>> from bbc.cpp:1: >>>> boostIncl/boost/mpl/apply.hpp:138:31: error: missing >>>> binary operator before token "(" >>>> In file included from >>>> /usr/include/c++/4.4/backward/hash_set:59, >>>> >>>> from boostIncl/boost/graph/adjacency_list.hpp:22, >>>> >>>> from RBGL.hpp:26, >>>> >>>> from bbc.cpp:1: >>>> /usr/include/c++/4.4/backward/backward_warning.h:28:2: warning: >>>> #warning >>>> This file includes at least one deprecated or antiquated header which >>>> may >>>> be removed without further notice at a future date. Please use a >>>> non-deprecated interface with equivalent functionality instead. For a >>>> listing of replacement headers and interfaces, consult the file >>>> backward_warning.h. To disable this warning use -Wno-deprecated. >>>> make: *** [bbc.o] error 1 >>>> ERROR: compilation failed for package >>>> ‘RBGL’ >>>> * Removing >>>> ‘/home/trace/R/i486-pc-linux-gnu-library/2.9/RBGL’ >>>> >>>> The downloaded packages are in >>>> >>>> ‘/tmp/Rtmp6CoA1c/downloaded_packages’ >>>> Warning message: >>>> In install.packages(pkgs = pkgs, repos = repos, dependencies = >>>> dependencies, : >>>> installation of package 'RBGL' had >>>> non-zero exit status >>>> and this is my r information: >>>> sessionInfo() >>>> R version 2.9.2 (2009-08-24) >>>> >>>> i486-pc-linux-gnu >>>> >>>> locale: >>>> LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE= zh_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8 ;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_I DENTIFICATION=C >>>> >>>> attached base packages: >>>> [1] stats >>>> graphics grDevices utils datasets >>>> methods base >>>> >>>> other >>>> attached packages:n >>>> [1] graph_1.22.5 >>>> >>>> loaded via a >>>> namespace (and not attached): >>>> [1] tcltk_2.9.2 tools_2.9.2 >>>> >>>> My g++ version is 4.4.1 ubuntu >>>> >>>> >>>> thanks. >>>> >>>> LiYun >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at stat.math.ethz.ch >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>>> >>> >>> >>> >> >> > > > >
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