Question: exon and transcription start site locations
0
gravatar for Paul Evans
10.0 years ago by
Paul Evans180
Paul Evans180 wrote:
Hi, I wanted to find out the exact locations on the genes (and the chromosome) for exons and transcription start sites in the human genome. Is there any package that will let me get at this information? Alternatively, how should I go about getting this information? thanks! [[alternative HTML version deleted]]
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ADD COMMENTlink modified 10.0 years ago by Michael Lawrence620 • written 10.0 years ago by Paul Evans180
Answer: exon and transcription start site locations
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gravatar for Michael Lawrence
10.0 years ago by
Michael Lawrence620 wrote:
See the experimental data package called: GenomicFeatures.Hsapiens.UCSC.hg18. On Tue, Nov 24, 2009 at 2:39 PM, Paul Evans <p.evans48@yahoo.com> wrote: > Hi, > > I wanted to find out the exact locations on the genes (and the chromosome) > for exons and transcription start sites in the human genome. Is there any > package that will let me get at this information? Alternatively, how should > I go about getting this information? > thanks! > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENTlink written 10.0 years ago by Michael Lawrence620
Answer: exon and transcription start site locations
0
gravatar for Wei Shi
10.0 years ago by
Wei Shi3.2k
Australia
Wei Shi3.2k wrote:
Dear Paul: I use the annotation files from NCBI website: human: ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/mapview/seq_gene.md.gz Mouse: ftp://ftp.ncbi.nlm.nih.gov/genomes/M_musculus/mapview/seq_gene.md.gz Rat: ftp://ftp.ncbi.nlm.nih.gov/genomes/R_norvegicus/mapview/seq_gene.md.gz Cheers, Wei Paul Evans wrote: > Hi, > > I wanted to find out the exact locations on the genes (and the chromosome) for exons and transcription start sites in the human genome. Is there any package that will let me get at this information? Alternatively, how should I go about getting this information? > thanks! > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 10.0 years ago by Wei Shi3.2k
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