exon and transcription start site locations
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Paul Evans ▴ 180
@paul-evans-2716
Last seen 7.9 years ago
Hi, I wanted to find out the exact locations on the genes (and the chromosome) for exons and transcription start sites in the human genome. Is there any package that will let me get at this information? Alternatively, how should I go about getting this information? thanks! [[alternative HTML version deleted]]
Transcription GO Transcription GO • 1.2k views
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@michael-lawrence-2759
Last seen 7.9 years ago
See the experimental data package called: GenomicFeatures.Hsapiens.UCSC.hg18. On Tue, Nov 24, 2009 at 2:39 PM, Paul Evans <p.evans48@yahoo.com> wrote: > Hi, > > I wanted to find out the exact locations on the genes (and the chromosome) > for exons and transcription start sites in the human genome. Is there any > package that will let me get at this information? Alternatively, how should > I go about getting this information? > thanks! > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Wei Shi ★ 3.5k
@wei-shi-2183
Last seen 5 days ago
Australia/Melbourne/Olivia Newton-John …
Dear Paul: I use the annotation files from NCBI website: human: ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/mapview/seq_gene.md.gz Mouse: ftp://ftp.ncbi.nlm.nih.gov/genomes/M_musculus/mapview/seq_gene.md.gz Rat: ftp://ftp.ncbi.nlm.nih.gov/genomes/R_norvegicus/mapview/seq_gene.md.gz Cheers, Wei Paul Evans wrote: > Hi, > > I wanted to find out the exact locations on the genes (and the chromosome) for exons and transcription start sites in the human genome. Is there any package that will let me get at this information? Alternatively, how should I go about getting this information? > thanks! > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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