Question: AnnBuilder?
0
gravatar for John Lande
9.8 years ago by
John Lande280
John Lande280 wrote:
dear All, I used to analyse old custom chips long time ago, and to generate annotation i took advantage of AnnBuilder. I just found that this package is discontinued in current Bioconductor release. is there any package that generate annotation for custom chips in place for AnnBuilder? -- John [[alternative HTML version deleted]]
annotation annbuilder • 504 views
ADD COMMENTlink modified 9.8 years ago by Heidi Dvinge2.0k • written 9.8 years ago by John Lande280
Answer: AnnBuilder?
0
gravatar for Heidi Dvinge
9.8 years ago by
Heidi Dvinge2.0k
Heidi Dvinge2.0k wrote:
Hello John, AnnBuilder was phased out when the annotations where implemented in a database-like manner instead of as environments. Try having a look at AnnotationDbi. The SQLForge vignette is a good place to start. Cheers \Heidi > dear All, > > I used to analyse old custom chips long time ago, and to generate > annotation > i took advantage of AnnBuilder. > I just found that this package is discontinued in current Bioconductor > release. > is there any package that generate annotation for custom chips in place > for > AnnBuilder? > > -- > John > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENTlink written 9.8 years ago by Heidi Dvinge2.0k
Hi John, The SQLForge vignette for AnnotationDbi can be found here: http://www.bioconductor.org/packages/release/bioc/html/AnnotationDbi.h tml Marc Heidi Dvinge wrote: > Hello John, > > AnnBuilder was phased out when the annotations where implemented in a > database-like manner instead of as environments. Try having a look at > AnnotationDbi. The SQLForge vignette is a good place to start. > > Cheers > \Heidi > > >> dear All, >> >> I used to analyse old custom chips long time ago, and to generate >> annotation >> i took advantage of AnnBuilder. >> I just found that this package is discontinued in current Bioconductor >> release. >> is there any package that generate annotation for custom chips in place >> for >> AnnBuilder? >> >> -- >> John >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >
ADD REPLYlink written 9.8 years ago by Marc Carlson7.2k
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