Question: Problems with Affylimma and AffylmGUI
0
gravatar for Maxim
9.9 years ago by
Maxim170
Maxim170 wrote:
Hi, I'm using AffylmGUI to analyze a few.cel files downloaded from GEO. This used to work nicely in former times but now I have problems with a couple of .cel files based on the mouse 430 2.0 array. I installed the the corresponding .db and .cdf files. But AffylmGUI does not link the probesets to the actual genes, rather all results (expression/differentially expressed genes) are shown with probeset_id but lack any gene specific information. I guess this behavior is related to the error that I get when calling the differentially regulated genes: warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.8 This effect I see on Mac OS/Linux and Windows, all with R 2.8, BioC 2.3. Are there suggestions what I may be doing wrong? Maxim [[alternative HTML version deleted]]
cdf affylmgui • 414 views
ADD COMMENTlink written 9.9 years ago by Maxim170
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 385 users visited in the last hour