Problems installing RCurl
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@sunny-srivastava-3793
Last seen 9.6 years ago
Dear Bioconductor Helpers, I followed the directions on http://www.omegahat.org/RCurl/FAQ.html and found that libcurl.so was located in usr/lib32/ on my machine. I added this directory to my PATH and tried re-installing using biocLite("RCurl") but it did not work. when I do locate curl-config I dont find anything, although libcurl3 is installed on my machine. Please tell me what is the correct way to install this Package? any help is appreciated Thx S. -------------- > sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods [7] base other attached packages: [1] lattice_0.17-26 MASS_7.3-2 loaded via a namespace (and not attached): [1] grid_2.10.1 tools_2.10.1 [[alternative HTML version deleted]]
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@kasper-daniel-hansen-2979
Last seen 9 months ago
United States
You probably need the curl-devel package installed on your system. Ask your sysadmin about this. Kasper On Jan 13, 2010, at 0:49 AM, Sunny Srivastava wrote: > Dear Bioconductor Helpers, > I followed the directions on > > http://www.omegahat.org/RCurl/FAQ.html > > and found that libcurl.so was located in usr/lib32/ on my machine. I added > this directory to my PATH and tried re-installing using biocLite("RCurl") > but it did not work. > > when I do > locate curl-config > > I dont find anything, although libcurl3 is installed on my machine. > > Please tell me what is the correct way to install this Package? > > any help is appreciated > > Thx > S. > -------------- > >> sessionInfo() > R version 2.10.1 (2009-12-14) > x86_64-pc-linux-gnu > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods > [7] base > > other attached packages: > [1] lattice_0.17-26 MASS_7.3-2 > > loaded via a namespace (and not attached): > [1] grid_2.10.1 tools_2.10.1 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Hi, RCurl needs as SystemRequirements: curl (version 7.14.0 or higher) http://curl.haxx.se download the source curl-7.19.7.tar.gz<http: curl.haxx.se="" download="" curl-7.19.7.tar.gz="">( http://curl.haxx.se/download/curl-7.19.7.tar.gz) and compile it ./configure make make test (optional) make install then you have to see the installed version with curl-config, because RCurl use it to check (I had to reboot) $ curl-config --version libcurl 7.19.7 then install RCurl. Download the source, extract it and install it it. R CMD INSTALL <rcurl extracted="" directory=""> Hope it works Kachelo 2010/1/13 Kasper Daniel Hansen <khansen@stat.berkeley.edu> > You probably need the curl-devel package installed on your system. > > Ask your sysadmin about this. > > Kasper > > On Jan 13, 2010, at 0:49 AM, Sunny Srivastava wrote: > > > Dear Bioconductor Helpers, > > I followed the directions on > > > > http://www.omegahat.org/RCurl/FAQ.html > > > > and found that libcurl.so was located in usr/lib32/ on my machine. I > added > > this directory to my PATH and tried re-installing using biocLite("RCurl") > > but it did not work. > > > > when I do > > locate curl-config > > > > I dont find anything, although libcurl3 is installed on my machine. > > > > Please tell me what is the correct way to install this Package? > > > > any help is appreciated > > > > Thx > > S. > > -------------- > > > >> sessionInfo() > > R version 2.10.1 (2009-12-14) > > x86_64-pc-linux-gnu > > > > locale: > > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > > [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 > > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods > > [7] base > > > > other attached packages: > > [1] lattice_0.17-26 MASS_7.3-2 > > > > loaded via a namespace (and not attached): > > [1] grid_2.10.1 tools_2.10.1 > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Chao-Jen Wong ▴ 580
@chao-jen-wong-3603
Last seen 9.3 years ago
USA/Seattle/Fred Hutchinson Cancer Rese…
HI, Sunny, ** Can you install curl-devel rpms and see if the helps. Chao-Jen Sunny Srivastava wrote: > Dear Bioconductor Helpers, > I followed the directions on > > http://www.omegahat.org/RCurl/FAQ.html > > and found that libcurl.so was located in usr/lib32/ on my machine. I added > this directory to my PATH and tried re-installing using biocLite("RCurl") > but it did not work. > > when I do > locate curl-config > > I dont find anything, although libcurl3 is installed on my machine. > > Please tell me what is the correct way to install this Package? > > any help is appreciated > > Thx > S. > -------------- > > >> sessionInfo() >> > R version 2.10.1 (2009-12-14) > x86_64-pc-linux-gnu > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods > [7] base > > other attached packages: > [1] lattice_0.17-26 MASS_7.3-2 > > loaded via a namespace (and not attached): > [1] grid_2.10.1 tools_2.10.1 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Chao-Jen Wong Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., M2-B876 PO Box 19024 Seattle, WA 98109 206.667.4485 cwon2 at fhcrc.org
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Thank you all - Downloading curl (version 7.14.0 or higher) and installing it solved the problem. On Wed, Jan 13, 2010 at 2:47 PM, Chao-Jen Wong <cwon2@fhcrc.org> wrote: > HI, Sunny, > ** > Can you install curl-devel rpms and see if the helps. > > Chao-Jen > > Sunny Srivastava wrote: > > Dear Bioconductor Helpers, > > I followed the directions on > > > > http://www.omegahat.org/RCurl/FAQ.html > > > > and found that libcurl.so was located in usr/lib32/ on my machine. I > added > > this directory to my PATH and tried re-installing using biocLite("RCurl") > > but it did not work. > > > > when I do > > locate curl-config > > > > I dont find anything, although libcurl3 is installed on my machine. > > > > Please tell me what is the correct way to install this Package? > > > > any help is appreciated > > > > Thx > > S. > > -------------- > > > > > >> sessionInfo() > >> > > R version 2.10.1 (2009-12-14) > > x86_64-pc-linux-gnu > > > > locale: > > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > > [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 > > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods > > [7] base > > > > other attached packages: > > [1] lattice_0.17-26 MASS_7.3-2 > > > > loaded via a namespace (and not attached): > > [1] grid_2.10.1 tools_2.10.1 > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > -- > Chao-Jen Wong > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Avenue N., M2-B876 > PO Box 19024 > Seattle, WA 98109 > 206.667.4485 > cwon2@fhcrc.org > > [[alternative HTML version deleted]]
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