Installing problems of Flow Cytometry on Ubuntu
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Josef Spidlen ▴ 140
@josef-spidlen-3720
Last seen 9.6 years ago
Hi Philipp, You can get devel versions of R at ftp://ftp.stat.math.ethz.ch/Software/R/. I believe the idea has always been that BioC devel (i.e., 2.6) works with R devel; iFlow is in BioC 2.6 so that should work. However, iFlow may not necessarily need the latest R. I haven't tried the latest version but I have been playing with iFlow back in 2009 using R 2.9 or so. You can install iFlow from sources from the SVN repository (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks) user readonly, password readonly. To install it, run the R CMD INSTALL . The only pain with this approach is that you will have to manually resolve all the dependencies. Good luck. Cheers, Josef > Date: Mon, 08 Feb 2010 11:52:41 +0100 > From: Philipp Meng <philipp.meng at="" meduniwien.ac.at=""> > To: Martin Morgan <mtmorgan at="" fhcrc.org=""> > Cc: bioconductor <bioconductor at="" stat.math.ethz.ch=""> > Subject: Re: [BioC] Installing problems of Flow Cytometry on Ubuntu > Karmic > Message-ID: > <8094_1265626362_4B6FECFA_8094_970433_1_1265626361.27897.2.camel at preyfish> > > Content-Type: text/plain; charset="UTF-8" > > Hi Martin, > > Thanks for your fast response. I updated R now to version 2.10.2 from > the repositories directly from the R project. > Now i can install flowMerge without problems. > THANK YOU! > But still, iFlow is not installable. Does it need the development > version of R? Do you have an idea where i could get this? > > Thanks, > > Philipp -- Josef Spidlen, Ph.D. Terry Fox Laboratory, BC Cancer Agency 675 West 10th Avenue, V5Z 1L3 Vancouver, BC, Canada Tel: +1 (604) 675-8000 x 7755 http://www.terryfoxlab.ca/people/rbrinkman/josef.aspx
Cancer flowMerge iFlow Cancer flowMerge iFlow • 1.0k views
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