regarding making of probe package
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sneha patil ▴ 220
@sneha-patil-3903
Last seen 9.6 years ago
Hiiii, I manually prepared a probe tab file just lyk the example probe tab file....but still while running the commands i am getting the scan error....though i checked...there are 6 elements in line 1 still i cannot solve the error > filename <- file.path(.path.package("AnnotationDbi"), "extdata", "demoprobe.gz") > outdir="C:/Program Files/R/R-2.10.1/library/AnnotationDbi/extdata" > me <- "Wolfgang Huber <w.huber@dkfz.de>" > makeProbePackage("HuGene10stv1", + datafile = gzfile(filename, open="r"), + species="Homo_sapiens", + outdir = outdir, + maintainer = me, + version = "0.0.1", + check=TRUE, + build=TRUE, + force=TRUE) Importing the data. Loading required package: affy Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 6 elements [[alternative HTML version deleted]]
probe probe • 638 views
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Entering edit mode
sneha patil ▴ 220
@sneha-patil-3903
Last seen 9.6 years ago
Hiiii, I manually prepared a probe tab file just lyk the example probe tab file....but still while running the commands i am getting the scan error....though i checked...there are 6 elements in line 1 still i cannot solve the error > filename <- file.path(.path.package("AnnotationDbi"), "extdata", "demoprobe.gz") > outdir="C:/Program Files/R/R-2.10.1/library/AnnotationDbi/extdata" > me <- "Wolfgang Huber <w.huber@dkfz.de>" > makeProbePackage("HuGene10stv1", + datafile = gzfile(filename, open="r"), + species="Homo_sapiens", + outdir = outdir, + maintainer = me, + version = "0.0.1", + check=TRUE, + build=TRUE, + force=TRUE) Importing the data. Loading required package: affy Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 6 elements [[alternative HTML version deleted]]
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