Question: Error GO.db package "term is not member of any ontology"
9.4 years ago by
Ana Conesa • 340
Ana Conesa • 340 wrote:
Dear all, I am working with the package GO.db (version 2.3.5) to retrieve information from GO terms and I find a large number of my GO IDs that apparently are not in the database, i.e. I get the following error: Error in getGOParents(x) : GO:0090153 is not a member of any ontology But this term can be found at the Amigo site as "regulation of sphingolipid biosynthetic process". And there are many more in this situation. I is this a problem of GO database versions?. How could I find within R these l"lost" terms? Thank you in advance Ana -- Ana Conesa Bioinformatics and Genomics Department Centro de Investigaciones Principe Felipe Avda. Autopista Saler 16, 46012 Valencia, Spain Phone: +34 96 328 96 80 Fax: +34 96 328 97 01 http://bioinfo.cipf.es/aconesa http://www.blast2go.org
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