installation of Rgraphviz
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Yanwei Tan ▴ 10
@yanwei-tan-4015
Last seen 9.6 years ago
Dear all, I am writing to consult everyone about installing package Rgraphviz on Mac 10.5.8. Here I met a problem of install. Following is the commands: > source("http://bioconductor.org/biocLite.R") > biocLite("Rgraphviz") Using R version 2.10.1, biocinstall version 2.5.10. Installing Bioconductor version 2.5 packages: [1] "Rgraphviz" Please wait... Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2 .10 trying URL 'http://www.bioconductor.org/packages/2.5/bioc/bin/macosx/leopard/cont rib/2.10/Rgraphviz_1.24.0.tgz' Content type 'application/x-gzip' length 800621 bytes (781 Kb) opened URL ================================================== downloaded 781 Kb The downloaded packages are in /var/folders/nB/nBQJ07xPEoiIliA+aw- UqU+++TI/-Tmp-//RtmpCLDBJ0/downloaded_packages > library(Rgraphviz) Loading required package: graph Loading required package: grid Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_ 64/Rgraphviz.so': dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/lib s/x86_64/Rgraphviz.so, 6): Library not loaded: /usr/local/lib/libgvc.5.dylib Referenced from: /Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86_6 4/Rgraphviz.so Reason: image not found Error: package/namespace load failed for 'Rgraphviz' Does anyone give me some hints about how to install this package? Or should I try download the package source? Let me know if extra info is needed. With many thanks in advance! the session info is: > sessionInfo() R version 2.10.1 (2009-12-14) x86_64-apple-darwin9.8.0 locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] XML_2.6-0 graph_1.24.4 loaded via a namespace (and not attached): [1] tools_2.10.1 Best regards, Wei
Rgraphviz Rgraphviz • 810 views
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@kasper-daniel-hansen-2979
Last seen 9 months ago
United States
As you stated in your off-list email to me, you need(ed) to install Graphviz. Kasper On Thu, Apr 8, 2010 at 8:18 PM, Yanwei Tan <tan at="" nbio.uni-="" heidelberg.de=""> wrote: > Dear all, > > I am writing to consult everyone about installing package Rgraphviz on Mac > 10.5.8. Here I met a problem of install. ?Following is the commands: > >> source("http://bioconductor.org/biocLite.R") >> ? ? biocLite("Rgraphviz") > Using R version 2.10.1, biocinstall version 2.5.10. > Installing Bioconductor version 2.5 packages: > [1] "Rgraphviz" > Please wait... > > Warning: unable to access index for repository > http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib /2.10 > trying URL > 'http://www.bioconductor.org/packages/2.5/bioc/bin/macosx/leopard/co ntrib/2.10/Rgraphviz_1.24.0.tgz' > Content type 'application/x-gzip' length 800621 bytes (781 Kb) > opened URL > ================================================== > downloaded 781 Kb > > > The downloaded packages are in > > ?/var/folders/nB/nBQJ07xPEoiIliA+aw- UqU+++TI/-Tmp-//RtmpCLDBJ0/downloaded_packages >> library(Rgraphviz) > Loading required package: graph > Loading required package: grid > Error in dyn.load(file, DLLpath = DLLpath, ...) : > ?unable to load shared library > '/Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x8 6_64/Rgraphviz.so': > ?dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/ libs/x86_64/Rgraphviz.so, > 6): Library not loaded: /usr/local/lib/libgvc.5.dylib > ?Referenced from: > /Library/Frameworks/R.framework/Resources/library/Rgraphviz/libs/x86 _64/Rgraphviz.so > ?Reason: image not found > Error: package/namespace load failed for 'Rgraphviz' > > Does anyone give me some hints about how to install this package? ?Or should > I try download the package source? Let me know if extra info is needed. With > many thanks in advance! > > the session info is: >> sessionInfo() > R version 2.10.1 (2009-12-14) > x86_64-apple-darwin9.8.0 > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] grid ? ? ?stats ? ? graphics ?grDevices utils ? ? datasets ?methods > base > > other attached packages: > [1] XML_2.6-0 ? ?graph_1.24.4 > > loaded via a namespace (and not attached): > [1] tools_2.10.1 > > > Best regards, > Wei > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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