Rgraphviz crashes Windows
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Sancar Adali ▴ 30
@sancar-adali-4061
Last seen 9.6 years ago
I've installed Rgraphviz from source using Graphviz version 2.20.3. I'm using Windows Vista 64-bit and R 2.10.1. However R crashes (as a standard windows application crashes with "R stopped working" messages) when I use "plot" function. For example running the following code crashes R. V<- letters[1:10] M<- 1:4 g1<- randomGraph(V, M, .2) plot(g1) I have the same problem in Windows 7. The same problem when I install the Rgraphviz binary package
Rgraphviz Rgraphviz • 1.1k views
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@herve-pages-1542
Last seen 1 day ago
Seattle, WA, United States
Hi Sancar, sessionInfo() please? Sancar Adali wrote: > I've installed Rgraphviz from source using Graphviz version 2.20.3. I'm > using Windows Vista 64-bit and R 2.10.1. Using R 2.10.1 means you are using BioC 2.5 which is not the current BioC release (hence no more support). Please upgrade to R 2.11 and reinstall BioC with biocLite(). biocLite() will automatically grab the correct version of BioC (i.e. BioC 2.6, released 10 days ago). Cheers, H. > However R crashes (as a standard windows application crashes with "R > stopped working" messages) when I use "plot" function. For example > running the following code crashes R. > > V<- letters[1:10] > M<- 1:4 > g1<- randomGraph(V, M, .2) > plot(g1) > > I have the same problem in Windows 7. The same problem when I install > the Rgraphviz binary package > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
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R version 2.10.1 (2009-12-14) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] grid stats graphics grDevices utils datasets methods [8] base other attached packages: [1] Rgraphviz_1.24.0 graph_1.24.4 loaded via a namespace (and not attached): [1] tools_2.10.1 2010/5/4 Hervé Pagès <hpages@fhcrc.org> > Hi Sancar, > > sessionInfo() please? > > > Sancar Adali wrote: > >> I've installed Rgraphviz from source using Graphviz version 2.20.3. I'm >> using Windows Vista 64-bit and R 2.10.1. >> > > Using R 2.10.1 means you are using BioC 2.5 which is not the current > BioC release (hence no more support). Please upgrade to R 2.11 and > reinstall BioC with biocLite(). biocLite() will automatically grab > the correct version of BioC (i.e. BioC 2.6, released 10 days ago). > > Cheers, > H. > > However R crashes (as a standard windows application crashes with "R >> stopped working" messages) when I use "plot" function. For example running >> the following code crashes R. >> >> V<- letters[1:10] >> M<- 1:4 >> g1<- randomGraph(V, M, .2) >> plot(g1) >> >> I have the same problem in Windows 7. The same problem when I install >> the Rgraphviz binary package >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M2-B876 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpages@fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > -- Sancar Adali Johns Hopkins University Graduate Student [[alternative HTML version deleted]]
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@kasper-daniel-hansen-2979
Last seen 9 months ago
United States
You are using a 64 bit version of Windows. Since you are using R-2.10 I presume you are using a 32 bit version of Rgraphviz. Based on other reports, you may have to use a newer Graphviz (2.24 or 2.26) and this means you will need to compile Rgraphviz yourself. Kasper On Tue, May 4, 2010 at 6:17 PM, Sancar Adali <sadali at="" gmail.com=""> wrote: > I've installed Rgraphviz from source using Graphviz version 2.20.3. I'm > using Windows Vista 64-bit and R 2.10.1. > However R crashes (as a standard windows application crashes with "R stopped > working" messages) when I use "plot" function. For example running the > following code crashes R. > > ?V<- letters[1:10] > ?M<- 1:4 > ?g1<- randomGraph(V, M, .2) > ?plot(g1) > > I have the same problem ?in Windows 7. The same problem when I ?install the > Rgraphviz binary package > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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