> source('basicGSEA.R') 'envir' chosen:<environment: r_globalenv=""> encoding = "native.enc" chosen Error: '\%' is an unrecognized escape in character string starting "Tag \%" > sessionInfo() R version 2.11.0 (2010-04-22) i386-pc-mingw32 locale: [1] LC_COLLATE=Norwegian (Bokm?l)_Norway.1252 LC_CTYPE=Norwegian (Bokm?l)_Norway.1252 LC_MONETARY=Norwegian (Bokm?l)_Norway.1252 LC_NUMERIC=C [5] LC_TIME=Norwegian (Bokm?l)_Norway.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] limma_3.4.1 Strange never had a problem with GSEA.1.0.R before. Typical though, right before an R introductory course in microarray analysis it crashes. Works fine on my ubuntu machine, I guess it is the Windows XP machines in the PC lab that are mixing things up. Anyone come across this error ? Chris

Hi, Chris. You might get a better answer by writing to the GSEA authors. I'm assuming here that the code you are talking about is not part of a bioconductor package. Sean On Thu, Jun 3, 2010 at 7:13 AM, Chris Fenton <chrisf@fagmed.uit.no> wrote: > > > source('basicGSEA.R') > 'envir' chosen:<environment: r_globalenv=""> > encoding = "native.enc" chosen > Error: '\%' is an unrecognized escape in character string starting "Tag > \%" > > > sessionInfo() > R version 2.11.0 (2010-04-22) > i386-pc-mingw32 > > locale: > [1] LC_COLLATE=Norwegian (Bokmål)_Norway.1252 LC_CTYPE=Norwegian > (Bokmål)_Norway.1252 LC_MONETARY=Norwegian (Bokmål)_Norway.1252 > LC_NUMERIC=C > [5] LC_TIME=Norwegian (Bokmål)_Norway.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] limma_3.4.1 > > > Strange never had a problem with GSEA.1.0.R before. > Typical though, right before an R introductory course in microarray > analysis it crashes. Works fine on my ubuntu machine, I guess it is the > Windows XP machines in the PC lab that are mixing things up. Anyone come > across this error ? > > > Chris > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]