Hello, I have the fellowing problem and I am thankful for any advice! Regards, Samuel ################################################################ >   source("http://bioconductor.org/biocLite.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). >     biocLite("SSPA") Using R version 2.11.0, biocinstall version 2.6.7. Installing Bioconductor version 2.6 packages: [1] "SSPA" Please wait... trying URL 'http://www.bioconductor.org/packages/2.6/bioc/bin/windows/ contrib/2.11/SSPA_1.4.0.zip' Content type 'application/zip' length 305310 bytes (298 Kb) opened URL downloaded 298 Kb package 'SSPA' successfully unpacked and MD5 sums checked > library(SSPA) Loading required package: qvalue Loading required package: tcltk Loading Tcl/Tk interface ... done Error : .onAttach failed in attachNamespace() for 'SSPA', details:   call: fun(...)   error: could not find function "addVigs2WinMenu" Error: package/namespace load failed for 'SSPA' > sessionInfo() R version 2.11.0 (2010-04-22) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252    LC_MONETARY=English_United Kingdom.1252 [4] LC_NUMERIC=C                            LC_TIME=English_United Kingdom.1252 attached base packages: [1] tcltk     stats     graphics  grDevices utils     datasets methods   base other attached packages: [1] qvalue_1.22.0 loaded via a namespace (and not attached): [1] limma_3.4.3  SSPA_1.4.0   tools_2.11.0 ###################################################################### #### [[alternative HTML version deleted]]

On 06/09/2010 01:35 PM, Samuel Okoye wrote: > > Hello, > > I have the fellowing problem and I am thankful for any advice! > > Regards, > Samuel > > ################################################################ >> source("http://bioconductor.org/biocLite.R") > BioC_mirror = http://www.bioconductor.org > Change using chooseBioCmirror(). >> biocLite("SSPA") > Using R version 2.11.0, biocinstall version 2.6.7. > Installing Bioconductor version 2.6 packages: > [1] "SSPA" > Please wait... > > trying URL 'http://www.bioconductor.org/packages/2.6/bioc/bin/window s/contrib/2.11/SSPA_1.4.0.zip' > Content type 'application/zip' length 305310 bytes (298 Kb) > opened URL > downloaded 298 Kb > > package 'SSPA' successfully unpacked and MD5 sums checked > >> library(SSPA) > Loading required package: qvalue > Loading > required package: tcltk > Loading Tcl/Tk interface ... done > Error : .onAttach failed in attachNamespace() for 'SSPA', details: > call: fun(...) > error: could not find function "addVigs2WinMenu" > Error: package/namespace load failed for 'SSPA' Hi Samuel my best guess is a package, other than SSPA, installed incorrectly. I'd make sure to start R so that it doesn't load any .Rdata or other files (e.g., with something like c:\Program Files\R\R-2.11\bin\Rgui --vanilla from the DOS shell) and then try updating packages as outlined at http://bioconductor.org/install. If that fails traceback() after the error occurs might help, as might trace(attachNamespace, browser=quote(print(nm))) before running the command. Martni >> sessionInfo() > R version 2.11.0 (2010-04-22) > i386-pc-mingw32 > > locale: > [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252 > [4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252 > > attached base packages: > [1] tcltk stats graphics grDevices utils datasets methods base > > other attached > packages: > [1] qvalue_1.22.0 > > loaded via a namespace (and not attached): > [1] limma_3.4.3 SSPA_1.4.0 tools_2.11.0 > > #################################################################### ###### > > > > > > [[alternative HTML version deleted]] > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793