Bayseq vignette is missing
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 3.0 years ago
United States
The Bayseq vignette appears to be missing. The .Rnw and .tex files are available, but they have not been compiled into a pdf. Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
baySeq baySeq • 1.0k views
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Chao-Jen Wong ▴ 580
@chao-jen-wong-3603
Last seen 9.3 years ago
USA/Seattle/Fred Hutchinson Cancer Reseā€¦
Do you mean the baySeq package? Usually the pdf version of vignette is not included in the repository because it can be automatically generated by the build system. If you get the source code from BioC repository, then you probably have to run R CMD build the generate the tarball that includes the pdf vignette. If you get the source code as a tarball from http://bioconductor.org/packages/release/bioc/html/baySeq.html, then you can install it directly and it should have a compiled pdf vignette. If you install the package using 'biocLite', then you should have a pdf vignette as well. Chao-Jen On 06/09/10 13:53, Naomi Altman wrote: > The Bayseq vignette appears to be missing. The .Rnw and .tex files > are available, but they have not been compiled into a pdf. > > Naomi S. Altman 814-865-3791 (voice) > Associate Professor > Dept. of Statistics 814-863-7114 (fax) > Penn State University 814-865-1348 (Statistics) > University Park, PA 16802-2111 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor -- Chao-Jen Wong Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., M1-B514 PO Box 19024 Seattle, WA 98109 206.667.4485 cwon2 at fhcrc.org
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I installed from the GUI. I will try biocLite in future. --Naomi At 06:42 PM 6/9/2010, Chao-Jen Wong wrote: >Do you mean the baySeq package? Usually the pdf version of vignette is >not included in the repository because it can be automatically generated >by the build system. If you get the source code from BioC repository, >then you probably have to run R CMD build the generate the tarball that >includes the pdf vignette. If you get the source code as a tarball from >http://bioconductor.org/packages/release/bioc/html/baySeq.html, then you >can install it directly and it should have a compiled pdf vignette. If >you install the package using 'biocLite', then you should have a pdf >vignette as well. > >Chao-Jen > > >On 06/09/10 13:53, Naomi Altman wrote: > > The Bayseq vignette appears to be missing. The .Rnw and .tex files > > are available, but they have not been compiled into a pdf. > > > > Naomi S. Altman 814-865-3791 (voice) > > Associate Professor > > Dept. of Statistics 814-863-7114 (fax) > > Penn State University 814-865-1348 (Statistics) > > University Park, PA 16802-2111 > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > >-- >Chao-Jen Wong >Program in Computational Biology >Division of Public Health Sciences >Fred Hutchinson Cancer Research Center >1100 Fairview Avenue N., M1-B514 >PO Box 19024 >Seattle, WA 98109 >206.667.4485 >cwon2 at fhcrc.org > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
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