Question: flowStats: lymphGate Issue, plotting the results?
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gravatar for Chao-Jen Wong
9.2 years ago by
Chao-Jen Wong580
USA/Seattle/Fred Hutchinson Cancer Research Center
Chao-Jen Wong580 wrote:
Hi, Aric, I moved the conversation here because other people might be benefit from it. Similar to rangeGate() and quandrantGate(), an extra argument 'plot' is added to lymphGate() to produce plots of filter results. This update is included in flowStats V 1.7.4 in the Bioc-devel branch. -------- Original Message -------- Subject: Re: flowStats update ?lymphGate Issue Date: Wed, 16 Jun 2010 11:09:44 -0700 From: Chao-Jen Wong <cwon2@fhcrc.org> Organization: Fred Hutchinson Cancer Research Center To: Aric Gregson <a.gregson@ucla.edu> Airc, That's a good suggestion. We thought using 'xyplot' (e.g., xyplot(`SSC-H`~`FSC-H`, dat, filter=lg$n2gate)) would be easy for the user to see the evaluation prior to adding the gate to a workflow. But since both rangeGate, quandrantGate have an option to plot the evaluation, it is a good idea to keep it consistent and let lymphGate to plot the evaluation automatically. I will let you know when it is done. Thanks, Chao-Jen On 06/15/10 17:42, Aric Gregson wrote: > Chao-Jen, > > Moving through this, I think I am having some trouble with lymphGate > function. It is evaluating, but it never plots the evaluation. It is very > helpful, as with the rangeGate, to see the results and perhaps alter them > prior to adding to a workFlow. > > aric > -- Chao-Jen Wong Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., M1-B514 PO Box 19024 Seattle, WA 98109 206.667.4485 cwon2@fhcrc.org [[alternative HTML version deleted]]
cancer flowstats • 487 views
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