Rgraphviz
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@janet-higgins-jic-4159
Last seen 9.6 years ago
Hi I am having problems installing and loading Rgraphviz. I have tried installing it in Windows with R versions 2.10.1 and 2.11.0, it appears to install ok but when I load it I get the following error Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details: call: value[[3L]](cond) error: unable to load shared library 'C:/PROGRA~1/R/R-211~1.0/library/Rgraphviz/libs/Rgraphviz.dll': LoadLibrary failure: The specified module could not be found. Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll': LoadLibrary failure: The specified module could not be found. I have also tried installing it running R version 2.10.0 in Unix and I get the following error configure: No --with-graphviz option was specified. Trying to find Graphviz using other methods. checking for pkg-config... /usr/bin/pkg-config Package libgvc was not found in the pkg-config search path. Perhaps you should add the directory containing `libgvc.pc' to the PKG_CONFIG_PATH environment variable No package 'libgvc' found configure: pkg-config was not able to find the Graphviz library libgvc. This either indicates that Graphviz is old or that something is wrong. Verify Graphviz is installed and that PKG_CONFIG_PATH is correct. checking for dotneato-config... no configure: dotneato-config not found in PATH. configure: Using default directory /usr/local, consider specifiying --with-graphviz configure: error: /usr/local/bin/dot not found. Check Graphviz installation. ERROR: configuration failed for package 'Rgraphviz' >From searching the various forum a lot of people appear to have had problems installing Rgraphviz but I cannot find many solutions. Can anyone help? Thanks Janet Dr Janet Higgins Dept of Crop Genetics John Innes Centre Norwich Research Park Colney Norwich NR4 7UH UK ?
Rgraphviz Rgraphviz • 2.9k views
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@martin-morgan-1513
Last seen 6 weeks ago
United States
Hi Janet -- For Linux, make sure that the 'devel' version of graphviz is installed. Do this using your distributions' package manager. For windows. follow exactly the instructions in the 'README' file located in http://bioconductor.org/packages/2.6/bioc/src/contrib/Rgraphviz_1.26.0 .tar.gz Martin On 07/08/2010 03:55 AM, Janet Higgins (JIC) wrote: > Hi > > I am having problems installing and loading Rgraphviz. > > I have tried installing it in Windows with R versions 2.10.1 and 2.11.0, it appears to install ok but when I load it I get the following error > > Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details: > call: value[[3L]](cond) > error: unable to load shared library 'C:/PROGRA~1/R/R-211~1.0/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > Error in inDL(x, as.logical(local), as.logical(now), ...) : > unable to load shared library 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > > I have also tried installing it running R version 2.10.0 in Unix and I get the following error > > configure: No --with-graphviz option was specified. Trying to find Graphviz using other methods. > checking for pkg-config... /usr/bin/pkg-config > Package libgvc was not found in the pkg-config search path. > Perhaps you should add the directory containing `libgvc.pc' > to the PKG_CONFIG_PATH environment variable > No package 'libgvc' found > configure: pkg-config was not able to find the Graphviz library libgvc. This either indicates that Graphviz is old or that something is wrong. Verify Graphviz is installed and that PKG_CONFIG_PATH is correct. > checking for dotneato-config... no > configure: dotneato-config not found in PATH. > configure: Using default directory /usr/local, consider specifiying --with-graphviz > configure: error: /usr/local/bin/dot not found. Check Graphviz installation. > ERROR: configuration failed for package 'Rgraphviz' > > From searching the various forum a lot of people appear to have had problems installing Rgraphviz but I cannot find many solutions. > Can anyone help? > > Thanks > Janet > > > Dr Janet Higgins > Dept of Crop Genetics > John Innes Centre > Norwich Research Park > Colney > Norwich > NR4 7UH > UK > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793
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Jan T. Kim ▴ 20
@jan-t-kim-3031
Last seen 9.6 years ago
Hi Janet, On Thu, Jul 08, 2010 at 11:55:36AM +0100, Janet Higgins (JIC) wrote: > Hi > > I am having problems installing and loading Rgraphviz. > > I have tried installing it in Windows with R versions 2.10.1 and 2.11.0, it appears to install ok but when I load it I get the following error > > Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details: > call: value[[3L]](cond) > error: unable to load shared library 'C:/PROGRA~1/R/R-211~1.0/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > Error in inDL(x, as.logical(local), as.logical(now), ...) : > unable to load shared library 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > > I have also tried installing it running R version 2.10.0 in Unix and I get the following error > > configure: No --with-graphviz option was specified. Trying to find Graphviz using other methods. > checking for pkg-config... /usr/bin/pkg-config > Package libgvc was not found in the pkg-config search path. > Perhaps you should add the directory containing `libgvc.pc' > to the PKG_CONFIG_PATH environment variable > No package 'libgvc' found > configure: pkg-config was not able to find the Graphviz library libgvc. This either indicates that Graphviz is old or that something is wrong. Verify Graphviz is installed and that PKG_CONFIG_PATH is correct. > checking for dotneato-config... no > configure: dotneato-config not found in PATH. > configure: Using default directory /usr/local, consider specifiying --with-graphviz > configure: error: /usr/local/bin/dot not found. Check Graphviz installation. > ERROR: configuration failed for package 'Rgraphviz' I've got Rgraphviz running on my Linux boxes. Perhaps all that's needed that's needed is to install graphviz incl. development option (that depends on the Linux distribution you use, on my CentOS based box they seem to be graphviz.x86_64 and graphviz-devel.x86_64). Possibly you'll need to re-install Rgraphviz after that. Best regards, Jan -- +- Jan T. Kim -------------------------------------------------------+ | email: j.kim at uea.ac.uk | | WWW: http://www.cmp.uea.ac.uk/people/jtk | *-----=< hierarchical systems are for files, not for humans >=-----*
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@herve-pages-1542
Last seen 1 day ago
Seattle, WA, United States
Hi Janet, On 07/08/2010 03:55 AM, Janet Higgins (JIC) wrote: > Hi > > I am having problems installing and loading Rgraphviz. > > I have tried installing it in Windows with R versions 2.10.1 and 2.11.0, it appears to install ok but when I load it I get the following error > > Error : .onLoad failed in loadNamespace() for 'Rgraphviz', details: > call: value[[3L]](cond) > error: unable to load shared library 'C:/PROGRA~1/R/R-211~1.0/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > Error in inDL(x, as.logical(local), as.logical(now), ...) : > unable to load shared library 'C:/PROGRA~1/R/R-210~1.1/library/Rgraphviz/libs/Rgraphviz.dll': > LoadLibrary failure: The specified module could not be found. > > I have also tried installing it running R version 2.10.0 in Unix and I get the following error > > configure: No --with-graphviz option was specified. Trying to find Graphviz using other methods. > checking for pkg-config... /usr/bin/pkg-config > Package libgvc was not found in the pkg-config search path. > Perhaps you should add the directory containing `libgvc.pc' > to the PKG_CONFIG_PATH environment variable > No package 'libgvc' found > configure: pkg-config was not able to find the Graphviz library libgvc. This either indicates that Graphviz is old or that something is wrong. Verify Graphviz is installed and that PKG_CONFIG_PATH is correct. > checking for dotneato-config... no > configure: dotneato-config not found in PATH. > configure: Using default directory /usr/local, consider specifiying --with-graphviz > configure: error: /usr/local/bin/dot not found. Check Graphviz installation. > ERROR: configuration failed for package 'Rgraphviz' On Ubuntu, first install libgraphviz-dev with: sudo apt-get install libgraphviz-dev Cheers, H. > > From searching the various forum a lot of people appear to have had problems installing Rgraphviz but I cannot find many solutions. > Can anyone help? > > Thanks > Janet > > > Dr Janet Higgins > Dept of Crop Genetics > John Innes Centre > Norwich Research Park > Colney > Norwich > NR4 7UH > UK > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
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