Hello, I am desperately seeking help to install Rgraphviz correctly. I have tried several graphviz versions as well as several R and bioconductor versions, as suggested in some of the mails on this list, with no luck. I finally succeeded installing Rgraphviz without any error messages using R: version 2.10 (bioconductor version 2.5), and graphviz: version 2.21 However, when I use the function plot to plot a graph object, I receive the following error message from windows: "R for windows GUI front-end has stopped working. a problem caused the program to stop working correctly windows will close the program and notify you if a solution is available". can anyone recommend a solution? Thank you, Neta. [[alternative HTML version deleted]]

Hi Neta, The Rgraphviz binary package for 32-bit Windows that is included in BioC 2.6 (the current release version of Bioconductor) should work fine. See the daily build/check results here: http://bioconductor.org/checkResults/2.6/bioc-LATEST/Rgraphviz /liverpool-checksrc.html Note the following info from the report: Using the following environment variables GRAPHVIZ_INSTALL_DIR=C:\/Graphviz2.20 GRAPHVIZ_INSTALL_MAJOR=2 GRAPHVIZ_INSTALL_MINOR=20 GRAPHVIZ_INSTALL_SUBMINOR=3 Make sure you use this version of graphviz. Also make sure you use R-2.11.1 + BioC 2.6 as we don't support older versions of R/BioC. Cheers, H. On 07/09/2010 11:19 AM, Neta Zuckerman wrote: > Hello, > > I am desperately seeking help to install Rgraphviz correctly. > I have tried several graphviz versions as well as several R and bioconductor > versions, as suggested in some of the mails on this list, with no luck. > I finally succeeded installing Rgraphviz without any error messages using R: > version 2.10 (bioconductor version 2.5), and graphviz: version 2.21 > However, when I use the function plot to plot a graph object, I receive the > following error message from windows: > "R for windows GUI front-end has stopped working. a problem caused the > program to stop working correctly windows will close the program and notify > you if a solution is available". > > can anyone recommend a solution? > Thank you, > Neta. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319