Problem for install DESeq
1
0
Entering edit mode
Jinyan Huang ▴ 190
@jinyan-huang-4157
Last seen 9.6 years ago
When I try to install DESeq. I got these errors. For differential expression analysis, have you compare with cuffdiff tools? Thanks. > source("http://www.bioconductor.org/biocLite.R") > biocLite("DESeq") Using R version 2.10.1, biocinstall version 2.5.11. Installing Bioconductor version 2.5 packages: [1] "DESeq" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?DESeq? is not available > sessionInfo() R version 2.10.1 (2009-12-14) i386-apple-darwin10.2.0 locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.10.1
DESeq DESeq • 1.3k views
ADD COMMENT
0
Entering edit mode
@vincent-j-carey-jr-4
Last seen 16 days ago
United States
please upgrade to R 2.11 -- i don't think DESeq was available for 2.10 On Fri, Jul 23, 2010 at 6:13 PM, Jinyan Huang <jhuang.ceph at="" gmail.com=""> wrote: > When I try to install DESeq. I got these errors. > For differential expression analysis, have you compare with cuffdiff > tools? Thanks. > >> source("http://www.bioconductor.org/biocLite.R") >> biocLite("DESeq") > Using R version 2.10.1, biocinstall version 2.5.11. > Installing Bioconductor version 2.5 packages: > [1] "DESeq" > Please wait... > > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > ?package ?DESeq? is not available >> sessionInfo() > R version 2.10.1 (2009-12-14) > i386-apple-darwin10.2.0 > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > loaded via a namespace (and not attached): > [1] tools_2.10.1 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENT

Login before adding your answer.

Traffic: 572 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6