Hi All, I am wondering if the DESeq package for Bioconductor has a function to plot and calculate the Pearson correlation for biological replicates? TIA [[alternative HTML version deleted]]

This is easily done without DESeq. E.g. you could use the cor function to compute correlations, and pairs to plot all pairs of samples. --Naomi At 06:42 PM 7/28/2010, Pete Shepard wrote: >Hi All, > >I am wondering if the DESeq package for Bioconductor has a function to plot >and calculate the Pearson correlation for biological replicates? > >TIA > > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111