Human Affymetrix Exon microarrays
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Jinyan Huang ▴ 190
@jinyan-huang-4157
Last seen 8.4 years ago
Hi all, Do you have some packages recommend for Human Affymetrix Exon 1.0 st microarrays? Thanks.
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@bhatti-gaurav-4184
Last seen 8.4 years ago
Hey Try exonmap. It involves installation of MySQL. If you don't want to do that then try aroma.affymetrix. They have a very comprehensive website http://www.aroma-project.org/ Gaurav Bhatti -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor- bounces@stat.math.ethz.ch] On Behalf Of Jinyan Huang Sent: Monday, August 02, 2010 4:44 PM To: Bioconductor mailing list Subject: [BioC] Human Affymetrix Exon microarrays Hi all, Do you have some packages recommend for Human Affymetrix Exon 1.0 st microarrays? Thanks. _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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More generally, have a look at http://www.bioconductor.org/help/workflows/oligo-arrays/, and in particular the section "Pre-Processing Resources". \Heidi > Hey > Try exonmap. It involves installation of MySQL. If you don't want to do > that then try aroma.affymetrix. They have a very comprehensive website > http://www.aroma-project.org/ > > Gaurav Bhatti > > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Jinyan Huang > Sent: Monday, August 02, 2010 4:44 PM > To: Bioconductor mailing list > Subject: [BioC] Human Affymetrix Exon microarrays > > Hi all, > > Do you have some packages recommend for Human Affymetrix Exon 1.0 st > microarrays? > > Thanks. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Exonmap has been deprecated in favour of xmapcore http://www.bioconductor.org/packages/release/bioc/html/xmapcore.html It still requires a MySQL database be installed locally, but no longer requires you to install the Ensembl database as well Tim On 02/08/2010 22:04, "Bhatti, Gaurav" <gbhatti at="" med.wayne.edu=""> wrote: > Hey > Try exonmap. It involves installation of MySQL. If you don't want to do that > then try aroma.affymetrix. They have a very comprehensive website > http://www.aroma-project.org/ > > Gaurav Bhatti > > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch > [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Jinyan Huang > Sent: Monday, August 02, 2010 4:44 PM > To: Bioconductor mailing list > Subject: [BioC] Human Affymetrix Exon microarrays > > Hi all, > > Do you have some packages recommend for Human Affymetrix Exon 1.0 st > microarrays? > > Thanks. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor -------------------------------------------------------- This email is confidential and intended solely for the u...{{dropped:12}}
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