Hi, wgRna is not support by makeTranscriptDbFromUCSC. is there other way to create SQLite file? >hg18_wgRna <-makeTranscriptDbFromUCSC(genome = "hg18",tablename = "wgRna") Error in makeTranscriptDbFromUCSC(genome = "hg18", tablename = "wgRna") :   table "wgRna" is not supported thanks YU [[alternative HTML version deleted]]

Hi Yuan, You always have the option to do things a little more hands on and use makeTranscriptDb() instead of makeTranscriptDbFromUCSC(). There is a manual page for it that gives details: ?makeTranscriptDb Marc On 08/12/2010 05:50 AM, Yuan Jian wrote: > Hi, > wgRna is not support by makeTranscriptDbFromUCSC. is there other way to create SQLite file? > > >> hg18_wgRna <-makeTranscriptDbFromUCSC(genome = "hg18",tablename = "wgRna") >> > Error in makeTranscriptDbFromUCSC(genome = "hg18", tablename = "wgRna") : > table "wgRna" is not supported > > thanks > YU > > > > > [[alternative HTML version deleted]] > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]