Question: Error: package/namespace load failed for 'IlluminaHumanMethylation27k.db'
8.3 years ago by
Kristel van Eijk • 10
Kristel van Eijk • 10 wrote:
Hello everyone, I have a problem when loading the library: IlluminaHumanMethylation27k.db I installed the package from zip (from the Bioconductor website), and also installed all the packages it asked for. It went all succesfull: "package 'IlluminaHumanMethylation27k.db' successfully unpacked and MD5 sums checked" But when I am trying to load this library I get an error: > library(IlluminaHumanMethylation27k.db) Loading required package: AnnotationDbi Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: org.Hs.eg.db Loading required package: DBI Error : .onLoad failed in loadNamespace() for 'IlluminaHumanMethylation27k.db', details: call: sqliteExecStatement(con, statement, bind.data) error: RS-DBI driver: (error in statement: near "s": syntax error) Error: package/namespace load failed for 'IlluminaHumanMethylation27k.db' I have tried the following things: - I reinstalled the packages from Bioconductor (AnnotationDbi, Biobase, org.Hs.eg.db and DBI) - restarted R > sessionInfo() R version 2.11.1 (2010-05-31) i386-pc-mingw32 locale:  LC_COLLATE=Dutch_Netherlands.1252 LC_CTYPE=Dutch_Netherlands.1252 LC_MONETARY=Dutch_Netherlands.1252  LC_NUMERIC=C LC_TIME=Dutch_Netherlands.1252 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  org.Hs.eg.db_2.4.1 RSQLite_0.9-2 DBI_0.2-5 AnnotationDbi_1.10.2 Biobase_2.8.0 > traceback() 2: stop(gettextf("package/namespace load failed for '%s'", package), call. = FALSE, domain = NA) 1: library(IlluminaHumanMethylation27k.db) Thank you in advance, Kind regards, Kristel van Eijk PhD student (University Medical Center Utrecht, The Netherlands) [[alternative HTML version deleted]]
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