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Tan, MinHan
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@tan-minhan-431
Last seen 8.1 years ago

Hi,
I tried combining 2 Affybatches (HGU133A and HGU133Plus 2.0) using
combine in matchprobes, but ran into the following problems.
I used both R 1.9.0 and R 1.8.1 with the latest downloads from
Bioconductor.
> merged.data <- combine(list(DataHGU133A,DataHGU133P),
c("hgu133acdf",
"hgu133plus2cdf"), "mycdf", verbose=TRUE)
package:hgu133acdf hgu133acdf
package:hgu133plus2cdf hgu133plus2cdf
0 probes in common between hgu133acdf and hgu133acdf
Error in sequs[[i]] : subscript out of bounds
Looking at the combine function, I seem to be running into problems at
this point?
> tmp <- get(upp[1], uppname[1])
> str(tmp)
length 0 <environment>
> upp[1]
[1] "hgu133acdf"
> uppname[1]
[1] "package:hgu133acdf"
Your advice is very much appreciated!
Min-Han Tan
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