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Question: aCGH...'Genomic events'
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gravatar for BTIS Department
7.2 years ago by
BTIS Department10 wrote:
Dear Group members, I am using 'aCGH' package. In this I would like to run "find genomic events" with each of the array CGH samples. I am getting following error /**Output/** > genomic.events(ex.acgh) <- find.genomic.events(ex.acgh) Finding outliers Finding focal low level aberrations Finding transitions Finding focal amplifications Processing chromosome 1 Error: (subscript) logical subscript too long In addition: Warning messages: 1: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 2: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 3: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 4: In max(indstretch[indstretch < indaber[m]]) : no non-missing arguments to max; returning -Inf 5: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 6: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 7: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 8: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf I am not able to understand how the error "(subscript) logical subscript too long" can be removed. Help on this problem will be highly appreciated. Thanks, Nikhil Gadewal
cgh
ADD COMMENTlink modified 7.2 years ago by Sean Davis21k • written 7.2 years ago by BTIS Department10
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gravatar for Sean Davis
7.2 years ago by
Sean Davis21k
United States
Sean Davis21k wrote:
Hi, Nikhil. You'll probably want to follow the posting guide and post a reproducible example and the output of sessionInfo() in order to get good help. That way, we don't have to guess too much and give you incorrect advice. Sean On Wed, Sep 8, 2010 at 8:21 AM, BTIS Department <btis@actrec.gov.in> wrote: > Dear Group members, > > I am using 'aCGH' package. In this I would like to run "find > genomic events" with each of the array CGH samples. I am getting following > error > > /**Output/** > > genomic.events(ex.acgh) <- find.genomic.events(ex.acgh) >> > Finding outliers > Finding focal low level aberrations > Finding transitions > Finding focal amplifications > Processing chromosome 1 > Error: (subscript) logical subscript too long > In addition: Warning messages: > 1: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 2: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 3: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 4: In max(indstretch[indstretch < indaber[m]]) : > no non-missing arguments to max; returning -Inf > 5: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 6: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 7: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 8: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > > I am not able to understand how the error "(subscript) logical > subscript too long" can be removed. > Help on this problem will be highly appreciated. > > Thanks, > > Nikhil Gadewal > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENTlink written 7.2 years ago by Sean Davis21k
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