aCGH...'Genomic events'
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@btis-department-4246
Last seen 8.0 years ago
Dear Group members, I am using 'aCGH' package. In this I would like to run "find genomic events" with each of the array CGH samples. I am getting following error /**Output/** > genomic.events(ex.acgh) <- find.genomic.events(ex.acgh) Finding outliers Finding focal low level aberrations Finding transitions Finding focal amplifications Processing chromosome 1 Error: (subscript) logical subscript too long In addition: Warning messages: 1: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 2: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 3: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 4: In max(indstretch[indstretch < indaber[m]]) : no non-missing arguments to max; returning -Inf 5: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 6: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 7: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf 8: In min(indstretch[indstretch > indaber[m]]) : no non-missing arguments to min; returning Inf I am not able to understand how the error "(subscript) logical subscript too long" can be removed. Help on this problem will be highly appreciated. Thanks, Nikhil Gadewal
CGH CGH • 990 views
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@sean-davis-490
Last seen 3 months ago
United States
Hi, Nikhil. You'll probably want to follow the posting guide and post a reproducible example and the output of sessionInfo() in order to get good help. That way, we don't have to guess too much and give you incorrect advice. Sean On Wed, Sep 8, 2010 at 8:21 AM, BTIS Department <btis@actrec.gov.in> wrote: > Dear Group members, > > I am using 'aCGH' package. In this I would like to run "find > genomic events" with each of the array CGH samples. I am getting following > error > > /**Output/** > > genomic.events(ex.acgh) <- find.genomic.events(ex.acgh) >> > Finding outliers > Finding focal low level aberrations > Finding transitions > Finding focal amplifications > Processing chromosome 1 > Error: (subscript) logical subscript too long > In addition: Warning messages: > 1: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 2: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 3: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 4: In max(indstretch[indstretch < indaber[m]]) : > no non-missing arguments to max; returning -Inf > 5: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 6: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 7: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > 8: In min(indstretch[indstretch > indaber[m]]) : > no non-missing arguments to min; returning Inf > > I am not able to understand how the error "(subscript) logical > subscript too long" can be removed. > Help on this problem will be highly appreciated. > > Thanks, > > Nikhil Gadewal > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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