Question: R and Bioconductor packages
0
gravatar for Pintilie, Melania
17.3 years ago by
Pintilie, Melania50 wrote:
Hi, I am a statistician at the Princess Margaret Hospital and I will need to do some analysis on data from microarray. I have taken some courses, among them, being the course given by Terry Speed in which, the Bioconductor packages were introduced. Our UNIX administrator have downloaded R and the Bioconductor packages and installed them on our UNIX machine. However I have several problems when I try to use them. I would appreciate if you could shed some light and give me a hint on what should be done. Here are the problems which I encountered: 1) when I try to load the library marrayNorm: among the notes which come up on the screen there is: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/usr/local/R-1.5.1/library/tcltk/libs/tcltk.so": ld.so.1: /usr/local/R-1.5.1/bin/R.bin: fatal: relocation error: file /usr/local/R-1.5.1/ library/tcltk/libs/tcltk.so: symbol Tcl_GetString: referenced symbol not found Error in .C("delTcl", PACKAGE = "tcltk") : C/Fortran function name not in load table and also: Warning message: There is no package called `marrayPlots' in: library(package, char = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, 2) after quitting R with the option to save the work space image and re-starting R, I cannot use the functions in the libraries which were previously loaded (for example the function maNorm, which was for sure loaded with its help file). Do I have to load the libraries every time I am starting R? 3) The library sma doesn't seem to be in the package bundle either. Thank you. Melania Melania Pintilie Department of Biostatistics, Rm. 15-433 Ontario Cancer Institute Princess Margaret Hospital 610 University Ave. Toronto, ON, M5G 2M9 Tel: (416) 946-4501 ext. 4886 Fax: (416) 946-2048
microarray cancer • 551 views
ADD COMMENTlink modified 17.3 years ago by Warnes, Gregory R460 • written 17.3 years ago by Pintilie, Melania50
Answer: R and Bioconductor packages
0
gravatar for Jeff Gentry
17.3 years ago by
Jeff Gentry3.9k
Jeff Gentry3.9k wrote:
> Error in dyn.load(x, as.logical(local), as.logical(now)) : > unable to load shared library > "/usr/local/R-1.5.1/library/tcltk/libs/tcltk.so": > ld.so.1: /usr/local/R-1.5.1/bin/R.bin: fatal: relocation error: > file /usr/local/R-1.5.1/ > library/tcltk/libs/tcltk.so: symbol Tcl_GetString: referenced symbol > not found Do you have package 'tcltk' installed? If not, that needs to be installed. If so, is Tcl/TK (the libraries, not the R package) installed on the system? > 3) The library sma doesn't seem to be in the package bundle either. Its not, as it isn't a Bioconductor package. -J
ADD COMMENTlink written 17.3 years ago by Jeff Gentry3.9k
Answer: R and Bioconductor packages
0
gravatar for Warnes, Gregory R
17.3 years ago by
Warnes, Gregory R460 wrote:
> 2) after quitting R with the option to save the work space > image and > re-starting R, I cannot use the functions in the libraries which were > previously loaded (for example the function maNorm, which was > for sure > loaded with its help file). > Do I have to load the libraries every time I am starting R? > Yes, you do have to reload the libraries each time. -Greg LEGAL NOTICE Unless expressly stated otherwise, this message is confidential and may be privileged. It is intended for the addressee(s) only. Access to this E-mail by anyone else is unauthorized. If you are not an addressee, any disclosure or copying of the contents of this E-mail or any action taken (or not taken) in reliance on it is unauthorized and may be unlawful. If you are not an addressee, please inform the sender immediately.
ADD COMMENTlink written 17.3 years ago by Warnes, Gregory R460
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 207 users visited in the last hour