I want to analysis MeDip-chip experiments (Nimblegen 385K CpG Island Plus Promoter Arrays). MEDME is not suitable in my data analysis. Because MEDME need at least one full methylated array. My array is not this case. Is there some packages for QC and to find the different methylated gene in two phonotype? I have try Batman, but it is too hard to use. Thanks.

I want to analysis MeDip-chip experiments (Nimblegen 385K CpG Island Plus Promoter Arrays). MEDME is not suitable in my data analysis. Because MEDME need at least one full methylated array. My array is not this case. Is there some packages for QC and to find the different methylated gene in two phonotype? I have try Batman, but it is too hard to use. Thanks.