I have been having some problems with the RMA module and I found a thread in the archives regarding the problem, but I couldn't find any resolution to it. Does anyone know if this has been resolved? Here is my error message (I am analyzing 9 MOE430 chips using SSH to connect to a Sun workstation - version 1.8.0 of BioC): > > > > Data <- ReadAffy() > > > > eset <- rma(Data) > > > Error in if (a[k] > b[k]) return(1) else if (a[k] < b[k]) return(-1) : > > > missing value where TRUE/FALSE needed > > > In addition: Warning message: > > > NAs introduced by coercion Below is the thread could you also give us the results of traceback() called right after the error occurs. btw, it is not generally a good idea to assign the results of a function to a variable of the same name. On Fri, 2003-08-29 at 08:21, Lang Chen wrote: > Hi, there > > R version 1.71 > BioC version 1.2. > > library(affy) > data<-ReadAffy() > rma<-rma(data) > write.exprs(rma,file="rma.xls") > > Thank you for your help > > Lang Chen > > > > -----Original Message----- > From: Ben Bolstad [mailto:bolstad at stat.berkeley.edu <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor=""> ] > Sent: Friday, August 29, 2003 9:08 AM > To: Lang Chen > Subject: Re: [BioC] error while running RMA > > > Can you tell me the version of the package that you are using and what > functions you are calling to compute RMA? > > > On Fri, 2003-08-29 at 05:49, Lang Chen wrote: > > Hi, > > > > I am running RMA on eight ME 430 chips in the cluster(Linux). I got the > > following message. > > > > Error in if (a[k]>b[k] return (1) else if (a[k]<b[k] return="" (-1)="" :=""> > missing value where TRUE/FALSE needed > > In addition: Warning message: > > NAs introduced by coercion > > Execution halted > > > > What does it mean? What should I do? > > > > But it works on my PC (Windows 2000 PIII 128M RAM). > > > > Your help is greatly appreciated. > > > > Lang Chen > > > > Research Assistant > > Department of Biostatistics > > Section on Statistical Genetics > > Ryals Public Health Building, Suite 343A > > University of Alabama at Birmingham > > 1530 3rd Ave S > > Birmingham, Alabama 35294 > > Tel 205-9757772 > > > > _______________________________________________ > > Bioconductor mailing list > > <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor=""> Bioconductor at stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- Ben Bolstad < <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor=""> bolstad at stat.berkeley.edu> [[alternative HTML version deleted]]