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Joaquin Dopazo
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@joaquin-dopazo-4283
Last seen 9.6 years ago
Apologies for multiple posting
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A course on Statistical Methods for mRNA-Seq and ChIP-seq using
Bioconductor.
Different solutions for the most common problems derived from the use
of Next Generation Sequencing (NGS) in the study of the transcriptome
and DNA-protein binding using the popular
<http: www.bioconductor.org=""> Bioconductor package.
The course will be taught by Bioconductor developeprs from the
<http: www.stat.berkeley.edu="" biostat=""/> Division of Biostatistics,
School of Public Health, University of California, Berkeley and has
been organized in collaboration with the <http: bioinfo.cipf.es="">
Department of Bioinformatics of the CIPF. The course is especially
suited to bioinformaticists and advanced users of bioinformatic tools
interested in dealing with NGS data. It is also strongly recommended
to personnel in charge of data analysis in core facilities
implementing NGS.
The course will be held in the <http: bioinfo.cipf.es="" courses="" mdac="">
teaching facilities located in the premises of the CIPF.
More info: <http: bioinfo.cipf.es="" rna-seq2010="">
http://bioinfo.cipf.es/RNA-seq2010
Venue
<http: www.cipf.es=""> Centro de Investigacion Principe Felipe (CIPF),
Valencia, Spain
Dates
Course: 10th to 12th November, 2010.
Registration closes: 30th October, 2010.
Program of the course
* Introduction to high-throughput sequencing
* Experimental design
* Pre-processing: Image analysis, base-calling, read-mapping
* Exploratory data analysis
* Normalization and expression quantitation
* Differential expression
* Inference of isoform expression
* Introduction to ChIP-seq
* Statistical aspects of peak-finding
* Statistical software
Teachers:
<http: cbio.ensmp.fr="" %7eljacob=""/> Laurent Jacob
Oleg Mayba
University of California, Berkeley.
Organised by:
<http: www.stat.berkeley.edu="" %7esandrine=""/> Sandrine Dudoit
Joaquin Dopazo
Fees and on-line registration:
Registration fee: 500 ?. The price includes meals and coffees at the
course location, as well as the gala dinner. On-line registration:
<http: bioinfo.cipf.es="" rna-seq2010-reg=""> http://bioinfo.cipf.es/RNA-
seq2010-reg
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