Cy5: methylated or unmethylated?
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Shi, Tao ▴ 720
@shi-tao-199
Last seen 7.1 years ago
Hi Sean, Just noticed that in your methylumi document, on page 3, where you talk about the mapping. Should Cy5 be unmethylated? ...Tao > getAssayDataNameSubstitutions() regex result 1 AVG_Beta betas 2 Detection Pval pvals 3 Signal CY3 unmethylated 4 Signal CY5 methylated 5 Signal_Red unmethylated 6 Signal_Grn methylated 7 Signal_A unmethylated 8 Signal_B methylated
methylumi methylumi • 845 views
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@sean-davis-490
Last seen 12 weeks ago
United States
On Thu, Oct 7, 2010 at 7:19 PM, Shi, Tao <shidaxia@yahoo.com> wrote: > Hi Sean, > > Just noticed that in your methylumi document, on page 3, where you talk > about > the mapping. Should Cy5 be unmethylated? > > Hi, Tao. On the Golden Gate assay I think Cy5 represents the methylated locus. Sean > ...Tao > > > > getAssayDataNameSubstitutions() > regex result > 1 AVG_Beta betas > 2 Detection Pval pvals > 3 Signal CY3 unmethylated > 4 Signal CY5 methylated > 5 Signal_Red unmethylated > 6 Signal_Grn methylated > 7 Signal_A unmethylated > 8 Signal_B methylated > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Thanks, Sean! > >From: Sean Davis <sdavis2@mail.nih.gov> >To: "Shi, Tao" <shidaxia@yahoo.com> >Cc: bioconductor@stat.math.ethz.ch >Sent: Thu, October 7, 2010 4:34:55 PM >Subject: Re: [BioC] Cy5: methylated or unmethylated? > > > > >On Thu, Oct 7, 2010 at 7:19 PM, Shi, Tao <shidaxia@yahoo.com> wrote: > >Hi Sean, >> >>Just noticed that in your methylumi document, on page 3, where you talk about >>the mapping. Should Cy5 be unmethylated? >> >> Hi, Tao. On the Golden Gate assay I think Cy5 represents the methylated locus. Sean ...Tao > > >> getAssayDataNameSubstitutions() >regex result >1 AVG_Beta betas >2 Detection Pval pvals >3 Signal CY3 unmethylated >4 Signal CY5 methylated >5 Signal_Red unmethylated >6 Signal_Grn methylated >7 Signal_A unmethylated >8 Signal_B methylated > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor > > [[alternative HTML version deleted]]
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