Pairwise Function Output
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@lakshmi-kastury-4300
Last seen 9.6 years ago
Hi - I am new to Bioconductor. I have generated RMA expression data in order to analyze given probe data in the form of .CEL files. I am now at the point of performing a pairwise analysis, as written below: # Pairwise function - # Uses the output from RMA (x.rma), and the array parameter from covdesc.txt: results <- pairwise.comparison(x.rma, "Control", c("Y", "N"), raw.data) #Pairwise filter - significant <- pairwise.filter(results, fc=log2(1.5), min.present.no=10, tt=0.01, present.by.group=F) **I need assistance in exporting the top 25 probe values with lowest p-value to a .CSV file. I am not familiar with the syntax to export in this manner. Thanks, Lakshmi [[alternative HTML version deleted]]
probe probe • 828 views
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