Human Affymetrix Exon microarrays
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Ernest Turro ▴ 30
@ernest-turro-4127
Last seen 8.4 years ago
Hi, You might want to try my R package mmbgx. The package includes pre- defined probe-probeset mappings obtained from X:Map, which makes it too big for Bioconductor (135MB). I will adapt it to work with xmapcore, though, and then submit it to Bioconductor. I thought it might be useful to some of you in the meantime. It's available from http://bgx.org.uk/software/mmbgx.html . Ernest On 3 Aug 2010, at 08:23, Tim Yates wrote: > Exonmap has been deprecated in favour of xmapcore > > http://www.bioconductor.org/packages/release/bioc/html/xmapcore.html > > It still requires a MySQL database be installed locally, but no longer > requires you to install the Ensembl database as well > > Tim > > > On 02/08/2010 22:04, "Bhatti, Gaurav" <gbhatti at="" med.wayne.edu=""> wrote: > >> Hey >> Try exonmap. It involves installation of MySQL. If you don't want to do that >> then try aroma.affymetrix. They have a very comprehensive website >> http://www.aroma-project.org/ >> >> Gaurav Bhatti >> >> -----Original Message----- >> From: bioconductor-bounces at stat.math.ethz.ch >> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Jinyan Huang >> Sent: Monday, August 02, 2010 4:44 PM >> To: Bioconductor mailing list >> Subject: [BioC] Human Affymetrix Exon microarrays >> >> Hi all, >> >> Do you have some packages recommend for Human Affymetrix Exon 1.0 st >> microarrays? >> >> Thanks. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > -------------------------------------------------------- > This email is confidential and intended solely for the u...{{dropped:12}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
exonmap exonmap • 622 views
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