Anyone thinking of expanding rsbml capability of reading SBML versions?
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pj dias ▴ 60
@pj-dias-4324
Last seen 7.7 years ago
Hi, I'm a new user of bioconductor and I'm starting to work with rsbml package. The problem is that this package only recognizes currently level=2, version=1, so I'm sending this message if there is any possibility to import to R SBML files with higher versions. Pj [[alternative HTML version deleted]]
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@michael-lawrence-3846
Last seen 2.4 years ago
United States
It should support up to level=2, version=3. If you see something documented to the contrary, please let me know. It's true that it does not support level=3, but there's only so much time in a day. Thanks, Michael On Wed, Oct 27, 2010 at 3:25 AM, pj dias <pjdias87@gmail.com> wrote: > Hi, I'm a new user of bioconductor and I'm starting to work with rsbml > package. The problem is that this package only recognizes currently > level=2, > version=1, so I'm sending this message if there is any possibility to > import > to R SBML files with higher versions. > > Pj > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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You are right, I have mistaken with Cytoscape SBML import capabilities, but in fact my problem is with a SBML file level=2, version=4 ( http://www.comp-sys-bio.org/yeastnet/) (that’s why I couldn’t import it to rsbml). Hope next augmentation of rsbml SBML import capability will occur soon, so this package can cope and communicate with other developing software. Pj You are right, I mistaked with Cytoscape SBML import capabilities, but in fact my problem is with a SBML level=2, version=4 (). Hope next import rsbml SBML capabilities will be increased soon, it would be handy. Pj 2010/10/27 Michael Lawrence <lawrence.michael@gene.com> > It should support up to level=2, version=3. If you see something documented > to the contrary, please let me know. It's true that it does not support > level=3, but there's only so much time in a day. > > Thanks, > Michael > > > On Wed, Oct 27, 2010 at 3:25 AM, pj dias <pjdias87@gmail.com> wrote: > >> Hi, I'm a new user of bioconductor and I'm starting to work with rsbml >> package. The problem is that this package only recognizes currently >> level=2, >> version=1, so I'm sending this message if there is any possibility to >> import >> to R SBML files with higher versions. >> >> Pj >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > [[alternative HTML version deleted]]
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