problems with readIllumina()
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@koechert-karl-3751
Last seen 9.6 years ago
Hey, I've been using beedarray quite often, but now with the new version I'm running in some error when trying to reading in the bead level data with readIllumina(). Does anyone know why this is happening or had a similar experience? What is meant with file 'NA/NA'? Thanks for any help! Karl see below: > bld=readIllumina(arrayNames=targets$Array, textType=".txt", backgroundMethod="none", annoPkg="Humanv4", useImages=FALSE) Fehler in file(file, "rt") : kann Verbindung nicht öffnen //error: can't open connection Zusätzlich: Warnmeldung: //additional: error In file(file, "rt") : kann Datei 'NA/NA' nicht öffnen: No such file or directory // can't open file 'NA/NA' > bld=readIllumina(useImages = FALSE, illuminaAnnotation = "Humanv4") Fehler in file(file, "rt") : kann Verbindung nicht öffnen //error: can't open connection Zusätzlich: Warnmeldung: In file(file, "rt") ://additional: error kann Datei 'NA/NA' nicht öffnen: No such file or directory // can't open file 'NA/NA' > sessionInfo() R version 2.12.0 (2010-10-15) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252 [4] LC_NUMERIC=C LC_TIME=German_Germany.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] illuminaHumanv4BeadID.db_1.8.0 org.Hs.eg.db_2.4.6 RSQLite_0.9-2 [4] DBI_0.2-5 AnnotationDbi_1.12.0 limma_3.6.6 [7] beadarray_2.0.1 Biobase_2.10.0 loaded via a namespace (and not attached): [1] tools_2.12.0 [[alternative HTML version deleted]]
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