segmentation for Affy SNP arrays Mapping50K_Hind240
1
0
Entering edit mode
Yan Jiao ▴ 140
@yan-jiao-4354
Last seen 10.1 years ago
Hello there, Which software package doing a good job on segmentation for Mapping50K_Hind240 Affy SNP array? Many thanks Yan ********************************************************************** This email and any files transmitted with it are confide...{{dropped:10}}
SNP affy SNP affy • 760 views
ADD COMMENT
0
Entering edit mode
@henrik-bengtsson-4333
Last seen 5 months ago
United States
See the aroma.affymetrix package: http://www.aroma-project.org/ Example: # Preprocessing ds <- doCRMAv1("HapMap270,testSet", chipType="Mapping50K_Hind240", verbose=TRUE); # Segmentation cbs <- CbsModel(ds); fit <- fit(cbs, arrays=c(1,5,8), chromosomes=c(2,5,13:18), verbose=TRUE); # Interactive dynamic HTML report ce <- ChromosomeExplorer(cbs); process(ce, verbose=TRUE); [You can skip the fit() step, because it will be automatically done by process().] /Henrik On Fri, Nov 12, 2010 at 10:09 AM, Yan Jiao <y.jiao at="" ucl.ac.uk=""> wrote: > Hello there, > > > > Which software package doing a good job on segmentation for > Mapping50K_Hind240 ?Affy SNP array? > > > > Many thanks > > > > Yan > > > ********************************************************************** > This email and any files transmitted with it are confide...{{dropped:10}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENT

Login before adding your answer.

Traffic: 541 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6