beadarray locs files
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@alex-gutteridge-2935
Last seen 9.5 years ago
United States
Hi, I'm trying to use the BASH() function in beadarray. The docs say that BASH will try to use .locs files if available to save computation. I have .locs files, but they don't seem to conform to the naming convention that beadarray expects. The relevant bit from generateNeighbours() seems to be: locsFileName <- file.path(BLData at sectionData$Targets$directory[array], paste(BLData at sectionData$Targets$sectionName[array], "_Grn.locs", sep = "")) For my data for array this corresponds to a filename (directory path snipped): 5491099076_A_Grn.locs But in the data provided by my collaborator I have two .locs files per array (not sure why...): 5491099076_A-Swath1_Grn.locs 5491099076_A-Swath2_Grn.locs Is there anyway I can hack either the generateNeighbours() code or the .locs files themselves to get them read? -- Alex Gutteridge
beadarray beadarray • 700 views
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