Thanks, Steve. This is very helpful. - Paul On Nov 27, 2010, at 11:35 AM, Steve Lianoglou wrote: > Hi Paul, > > On Fri, Nov 26, 2010 at 7:51 PM, Paul Shannon > <pshannon at="" systemsbiology.org=""> wrote: >> Can anyone recommend a way to derive a list of oncogenes (even an inexact list) from the annotation packages, org.Hs.eg or something else? > > This isn't exactly what you want, but there's a "Cancer Gene Census" > list you can get from here: > > http://www.sanger.ac.uk/genetics/CGP/Census/ > > They list genes (by symbol & entrez id) and things like the types of > tumors they're found in, type of mutation, etc. There's no > oncogene/tumor-suppressor column, though ... > > Perhaps there are better sources, but there's one. > > -steve > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact